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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:45.8 nTPM
HPA:45.8 nTPM
GTEx:31.2 nTPM
FANTOM5:13.3 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:16.3 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051066
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 45.8
Sample id Sample description nTPM
Hippocampus
nTPM: 45.6
1898 Male, age 80, left hemisphere 47.1
2148 Female, age 91, left hemisphere 46.2
1855 Male, age 76, left hemisphere 45.7
2529 Female, age 94, left hemisphere 45.2
1911 Female, age 85, right hemisphere 44.9
2621 Female, age 67, right hemisphere 44.4
Dentate gyrus
nTPM: 45.2
2528 Male, age 74, both hemispheres 45.9
2530 Female, age 94, left hemisphere 45.9
1927 Female, age 91, both hemispheres 45.7
2010 Male, age 76, both hemispheres 44.8
2246 Female, age 85, both hemispheres 44.5
2531 Female, age 67, both hemispheres 44.4
Entorhinal gyrus
nTPM: 44.1
2117 Female, age 91, right hemisphere 45.2
2686 Male, age 75, right hemisphere 44.6
2764 Male, age 80, right hemisphere 44.4
1787 Male, age 76, left hemisphere 43.6
1938 Female, age 85, left hemisphere 43.5
2613 Female, age 94, left hemisphere 43.2
Hippocampus, CA1
nTPM: 45.2
2749 Male, age 80, left hemisphere 46.2
2045 Male, age 76, both hemispheres 45.8
2527 Male, age 74, both hemispheres 45.5
1873 Female, age 85, both hemispheres 45.4
2082 Female, age 91, right hemisphere 43.0
Hippocampus, CA2
nTPM: 45.2
1892 Male, age 76, both hemispheres 46.4
1963 Male, age 80, left hemisphere 46.4
2437 Female, age 94, left hemisphere 45.3
2249 Male, age 74, both hemispheres 45.2
2113 Female, age 91, right hemisphere 44.0
1940 Female, age 85, left hemisphere 43.9
Hippocampus, CA3
nTPM: 45.8
2436 Male, age 74, both hemispheres 47.9
2861 Female, age 67, both hemispheres 46.0
1867 Male, age 76, both hemispheres 45.7
1891 Female, age 85, both hemispheres 45.2
2620 Female, age 94, left hemisphere 45.2
2137 Male, age 80, left hemisphere 44.6
Parahippocampal cortex
nTPM: 44.1
2692 Male, age 74, both hemispheres 44.9
1990 Female, age 91, right hemisphere 44.5
2622 Female, age 67, right hemisphere 44.4
1850 Male, age 80, both hemispheres 44.3
1933 Female, age 85, both hemispheres 44.2
2532 Female, age 72, left hemisphere 44.1
2250 Female, age 67, right hemisphere 43.9
2693 Female, age 94, both hemispheres 43.8
2018 Male, age 76, both hemispheres 43.7
2245 Female, age 91, both hemispheres 43.3
Perirhinal gyrus
nTPM: 44.1
1794 Male, age 80, right hemisphere 45.1
1841 Female, age 85, right hemisphere 44.6
1847 Female, age 91, left hemisphere 44.0
2848 Male, age 76, right hemisphere 43.8
2521 Female, age 94, right hemisphere 43.2
Subiculum
nTPM: 44.4
2729 Female, age 91, right hemisphere 45.6
1977 Female, age 85, both hemispheres 44.9
1901 Male, age 80, both hemispheres 44.8
2619 Male, age 74, both hemispheres 44.1
2438 Female, age 94, left hemisphere 43.7
2042 Male, age 76, both hemispheres 43.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.2
Samples: 197

Max nTPM: 64.9
Min nTPM: 8.4
Std nTPM: 8.0
Median nTPM: 30.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 64.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 56.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 55.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 55.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 48.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 47.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 47.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 47.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 46.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 46.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 46.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 13.3
FF:10169-103B7 60 years, female 15.6
FF:10153-102I9 76 years, female 10.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 6.8
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.0
Sample A Female 8.1
Sample B Female 6.5
Sample C Male 6.5
Sample D Male 6.0
Entorhinal cortex
nTPM: 7.5
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.3
Sample A Female 7.7
Sample B Female 7.7
Sample C Male 8.2
Sample D Male 6.3
Subiculum
nTPM: 6.2
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.7
Sample A Female 6.8
Sample B Female 5.7
Sample C Male 6.2
Sample D Male 5.9
Ventral hippocampus
nTPM: 6.4
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.7
Sample A Female 5.9
Sample B Female 5.7
Sample C Male 6.8
Sample D Male 7.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 16.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 16.3
Samples: 4

Max nTPM: 19.6
Min nTPM: 11.8
Sample A Male 17.5
Sample B Male 19.6
Sample C Female 16.3
Sample D Female 11.8
Hippocampal formation
nTPM: 14.0
Samples: 4

Max nTPM: 16.2
Min nTPM: 12.1
Sample A Male 16.2
Sample B Male 13.8
Sample C Female 12.1
Sample D Female 13.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
69353687 Antisense, RP_050412_02_E10, Mouse strain C57BL/6J (56 days, male) 0.5

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