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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		67.170
RNA expressioni
Consensus:28.7 nTPM
HPA:28.7 nTPM
GTEx:32.5 nTPM
FANTOM5:99.8 Scaled Tags Per Million
Pig:36.5 nTPM
Mouse:26.7 nTPM
Allen mouse:2.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA058106
Glial cells Medium
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA058106
Hippocampal formation mean intensity 67.170
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 67.170
Molecular layer of the dentate gyrus 34.877
Granular dentate gyrus 41.088
CA1 - oriens layer 0.937
CA1 - pyramidal layer 1.318
CA1 - radiatum layer 1.102
CA2 - oriens layer 1.517
CA2 - pyramidal layer 1.015
CA2 - radiatum layer 1.549
CA3 - oriens layer 5.657
CA3 - pyramidal layer 9.217
CA3 - radiatum layer 2.914
Stratum lucidum 43.890
Lacunosum moleculare 1.211
Subiculum 2.933

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 28.7
Sample id Sample description nTPM
Hippocampus
nTPM: 25.3
1855 Male, age 76, left hemisphere 32.7
2148 Female, age 91, left hemisphere 28.6
1911 Female, age 85, right hemisphere 26.0
2621 Female, age 67, right hemisphere 22.8
1898 Male, age 80, left hemisphere 22.4
2529 Female, age 94, left hemisphere 19.2
Dentate gyrus
nTPM: 27.1
1927 Female, age 91, both hemispheres 30.0
2531 Female, age 67, both hemispheres 29.8
2010 Male, age 76, both hemispheres 29.4
2246 Female, age 85, both hemispheres 27.0
2530 Female, age 94, left hemisphere 24.4
2528 Male, age 74, both hemispheres 21.8
Entorhinal gyrus
nTPM: 18.0
2117 Female, age 91, right hemisphere 23.0
2686 Male, age 75, right hemisphere 17.7
2764 Male, age 80, right hemisphere 17.6
2613 Female, age 94, left hemisphere 17.2
1938 Female, age 85, left hemisphere 16.5
1787 Male, age 76, left hemisphere 16.0
Hippocampus, CA1
nTPM: 28.7
2045 Male, age 76, both hemispheres 65.2
1873 Female, age 85, both hemispheres 26.8
2082 Female, age 91, right hemisphere 20.7
2527 Male, age 74, both hemispheres 18.1
2749 Male, age 80, left hemisphere 12.7
Hippocampus, CA2
nTPM: 21.0
1892 Male, age 76, both hemispheres 27.7
1963 Male, age 80, left hemisphere 24.9
2437 Female, age 94, left hemisphere 19.4
2113 Female, age 91, right hemisphere 18.4
1940 Female, age 85, left hemisphere 18.0
2249 Male, age 74, both hemispheres 17.6
Hippocampus, CA3
nTPM: 22.3
1891 Female, age 85, both hemispheres 32.3
2620 Female, age 94, left hemisphere 27.5
1867 Male, age 76, both hemispheres 26.5
2861 Female, age 67, both hemispheres 21.7
2137 Male, age 80, left hemisphere 13.4
2436 Male, age 74, both hemispheres 12.7
Parahippocampal cortex
nTPM: 16.4
2692 Male, age 74, both hemispheres 24.6
2532 Female, age 72, left hemisphere 23.3
2018 Male, age 76, both hemispheres 18.0
1990 Female, age 91, right hemisphere 16.7
1850 Male, age 80, both hemispheres 16.3
2245 Female, age 91, both hemispheres 16.3
1933 Female, age 85, both hemispheres 15.1
2693 Female, age 94, both hemispheres 13.1
2250 Female, age 67, right hemisphere 11.3
2622 Female, age 67, right hemisphere 9.5
Perirhinal gyrus
nTPM: 13.1
2521 Female, age 94, right hemisphere 16.6
1794 Male, age 80, right hemisphere 13.2
1847 Female, age 91, left hemisphere 12.3
2848 Male, age 76, right hemisphere 12.0
1841 Female, age 85, right hemisphere 11.6
Subiculum
nTPM: 24.9
2042 Male, age 76, both hemispheres 31.3
1901 Male, age 80, both hemispheres 27.4
2438 Female, age 94, left hemisphere 24.8
2729 Female, age 91, right hemisphere 23.4
2619 Male, age 74, both hemispheres 22.0
1977 Female, age 85, both hemispheres 20.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 32.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.5
Samples: 197

Max nTPM: 90.9
Min nTPM: 2.7
Std nTPM: 15.6
Median nTPM: 30.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 90.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 81.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 79.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 74.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 70.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 68.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 64.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 64.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 61.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 61.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 60.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 99.8
FF:10153-102I9 76 years, female 100.2
FF:10169-103B7 60 years, female 99.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 36.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 36.5
Samples: 4

Max nTPM: 40.3
Min nTPM: 27.8
Sample A Female 40.3
Sample B Female 37.6
Sample C Male 40.3
Sample D Male 27.8
Entorhinal cortex
nTPM: 12.7
Samples: 4

Max nTPM: 14.2
Min nTPM: 11.8
Sample A Female 11.8
Sample B Female 14.2
Sample C Male 11.8
Sample D Male 13.1
Subiculum
nTPM: 17.2
Samples: 4

Max nTPM: 20.3
Min nTPM: 15.7
Sample A Female 16.7
Sample B Female 20.3
Sample C Male 15.9
Sample D Male 15.7
Ventral hippocampus
nTPM: 30.2
Samples: 4

Max nTPM: 39.7
Min nTPM: 22.5
Sample A Female 31.6
Sample B Female 26.8
Sample C Male 22.5
Sample D Male 39.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 26.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 13.2
Samples: 4

Max nTPM: 17.9
Min nTPM: 8.3
Sample A Male 16.9
Sample B Male 9.8
Sample C Female 17.9
Sample D Female 8.3
Hippocampal formation
nTPM: 26.7
Samples: 4

Max nTPM: 33.5
Min nTPM: 18.3
Sample A Male 18.3
Sample B Male 30.1
Sample C Female 33.5
Sample D Female 24.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.1
74047443 Antisense, RP_051214_01_G05, Mouse strain C57BL/6J (56 days, male) 4.4
70238925 Antisense, RP_050526_04_D05, Mouse strain C57BL/6J (56 days, male) 3.8
71213117 Antisense, RP_050816_03_H08, Mouse strain C57BL/6J (56 days, male) 0.2
71147924 Antisense, RP_050719_02_G08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.