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EIF4E2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.0 nTPM
HPA:29.0 nTPM
GTEx:24.2 nTPM
FANTOM5:104.6 Scaled Tags Per Million
Pig:20.8 nTPM
Mouse:39.8 nTPM
Allen mouse:1.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 29.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 26.8
2846 Female, age 79, unknown 28.7
1781 Male, age 74, unknown 27.5
1854 Male, age 80, left hemisphere 27.5
2290 Female, age 72, unknown 27.5
2288 Male, age 75, left hemisphere 27.4
1857 Female, age 85, left hemisphere 26.2
2481 Female, age 94, left hemisphere 26.0
2289 Male, age 61, right hemisphere 24.0
Claustrum
nTPM: 29.0
2284 Female, age 91, both hemispheres 30.7
2645 Female, age 72, unknown 30.5
2568 Male, age 61, both hemispheres 29.6
2392 Female, age 94, both hemispheres 29.3
2491 Male, age 75, both hemispheres 29.1
1956 Male, age 74, unknown 28.7
2196 Female, age 79, unknown 28.6
2198 Male, age 80, both hemispheres 28.3
2292 Female, age 85, both hemispheres 26.0
Globus pallidus, externus
nTPM: 28.4
2395 Male, age 75, both hemispheres 30.0
2567 Female, age 72, unknown 28.8
2646 Male, age 61, right hemisphere 28.2
1996 Male, age 80, right hemisphere 27.8
2772 Female, age 79, unknown 27.4
Globus pallidus, internus
nTPM: 28.5
2566 Female, age 72, unknown 30.0
2287 Male, age 75, right hemisphere 29.7
2778 Female, age 91, both hemispheres 29.6
2483 Female, age 94, right hemisphere 28.4
2037 Male, age 80, right hemisphere 27.7
2111 Female, age 85, right hemisphere 27.6
1818 Male, age 74, unknown 26.6
Nucleus accumbens
nTPM: 27.6
2824 Male, age 61, right hemisphere 29.6
2391 Female, age 94, left hemisphere 29.2
1783 Male, age 74, unknown 28.6
1856 Female, age 91, right hemisphere 27.5
2286 Male, age 75, left hemisphere 27.4
2698 Female, age 72, unknown 26.8
1806 Female, age 85, left hemisphere 26.0
2732 Male, age 80, right hemisphere 25.9
Nucleus basalis of Meynert
nTPM: 27.5
2821 Male, age 75, both hemispheres 28.4
2393 Male, age 80, right hemisphere 27.8
2569 Male, age 61, both hemispheres 27.6
2484 Female, age 94, left hemisphere 26.0
Nucleus of the diagonal band
nTPM: 27.6
2029 Male, age 61, right hemisphere 28.8
2775 Male, age 80, right hemisphere 28.8
2195 Female, age 85, both hemispheres 27.5
1812 Female, age 91, both hemispheres 27.2
1979 Male, age 74, unknown 25.5
Olfactory tubercle
nTPM: 27.7
2856 Male, age 75, right hemisphere 28.1
2487 Female, age 94, left hemisphere 27.8
1998 Female, age 91, both hemispheres 27.7
1846 Male, age 80, right hemisphere 27.0
Putamen
nTPM: 28.1
1829 Male, age 74, unknown 30.7
2647 Male, age 75, left hemisphere 28.8
2482 Female, age 94, left hemisphere 28.0
1937 Female, age 91, right hemisphere 27.7
2466 Female, age 79, unknown 27.6
1838 Male, age 80, right hemisphere 27.5
2489 Female, age 72, unknown 26.7
Septal nuclei
nTPM: 27.2
1960 Male, age 74, unknown 27.9
2031 Female, age 72, unknown 27.8
2394 Male, age 61, left hemisphere 27.3
2629 Female, age 94, right hemisphere 27.3
2009 Female, age 91, both hemispheres 27.2
2059 Female, age 85, both hemispheres 26.8
2199 Male, age 80, right hemisphere 26.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.2
Samples: 246

Max nTPM: 33.0
Min nTPM: 16.7
Std nTPM: 3.1
Median nTPM: 22.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 33.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 32.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 31.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 30.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 30.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 30.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 29.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 29.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 29.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 29.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 29.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.5
Samples: 246

Max nTPM: 33.2
Min nTPM: 15.9
Std nTPM: 3.0
Median nTPM: 23.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 33.2
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 33.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 32.5
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 31.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 30.6
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 30.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 29.4
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 29.1
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 28.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 28.7
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 28.7
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Brain - Putamen (basal ganglia)
Average nTPM: 24.2
Samples: 205

Max nTPM: 33.3
Min nTPM: 17.7
Std nTPM: 2.9
Median nTPM: 24.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 33.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 32.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 31.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 30.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 30.4
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 30.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 30.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 30.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 29.9
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 29.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 29.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 93.2
FF:10164-103B2 76 years, female 93.2
Globus pallidus
Scaled Tags Per Million: 102.7
FF:10161-103A8 76 years, female 105.3
FF:10175-103C4 60 years, female 100.2
Nucleus accumbens
Scaled Tags Per Million: 104.6
FF:10037-101F1 23-56 years, mixed 104.6
Putamen
Scaled Tags Per Million: 92.8
FF:10176-103C5 60 years, female 92.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.8
Pig sample Sample description nTPM
Caudate
nTPM: 20.7
Samples: 4

Max nTPM: 22.1
Min nTPM: 19.6
Sample A Female 21.3
Sample B Female 19.8
Sample C Male 22.1
Sample D Male 19.6
Putamen
nTPM: 19.4
Samples: 4

Max nTPM: 20.4
Min nTPM: 17.9
Sample A Female 19.5
Sample B Female 19.6
Sample C Male 17.9
Sample D Male 20.4
Septum
nTPM: 20.4
Samples: 4

Max nTPM: 21.6
Min nTPM: 18.9
Sample A Female 21.6
Sample B Female 21.5
Sample C Male 18.9
Sample D Male 19.4
Ventral pallidum
nTPM: 20.8
Samples: 4

Max nTPM: 21.8
Min nTPM: 19.6
Sample A Female 20.4
Sample B Female 21.8
Sample C Male 19.6
Sample D Male 21.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 39.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.8
Samples: 4

Max nTPM: 39.6
Min nTPM: 34.0
Sample A Male 34.0
Sample B Male 39.3
Sample C Female 39.6
Sample D Female 38.4
Septum
nTPM: 35.8
Samples: 4

Max nTPM: 39.5
Min nTPM: 33.4
Sample A Male 35.0
Sample B Male 33.4
Sample C Female 35.2
Sample D Female 39.5
Ventral forebrain
nTPM: 39.8
Samples: 4

Max nTPM: 44.0
Min nTPM: 37.6
Sample A Male 38.0
Sample B Male 37.6
Sample C Female 39.4
Sample D Female 44.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.6
69012855 Antisense, RP_050309_01_F04, Mouse strain C57BL/6J (56 days, male) 1.6
Pallidum
Expression energy: 1.3
69012855 Antisense, RP_050309_01_F04, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.