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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.4 nTPM
HPA:40.4 nTPM
GTEx:33.4 nTPM
FANTOM5:72.4 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:18.5 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.7
2586 Male, age 75, left hemisphere 49.1
2019 Male, age 18, unknown 42.6
2828 Female, age 72, unknown 39.7
2666 Male, age 74, left hemisphere 38.2
1827 Male, age 72, unknown 37.9
1870 Female, age 42, unknown 37.5
1833 Male, age 53, unknown 36.7
1830 Male, age 51, unknown 36.3
2411 Female, age 72, unknown 35.6
2219 Male, age 76, both hemispheres 33.8
Dorsal raphe nucleus
nTPM: 36.8
1828 Male, age 53, unknown 37.9
2016 Female, age 72, unknown 37.9
2750 Male, age 76, both hemispheres 37.3
2047 Male, age 72, unknown 36.9
2298 Female, age 72, unknown 34.1
Inferior colliculus
nTPM: 37.0
1848 Female, age 42, unknown 37.7
1890 Male, age 53, unknown 37.5
2097 Female, age 72, unknown 37.5
2849 Male, age 72, unknown 35.3
Median raphe nucleus
nTPM: 35.8
2220 Male, age 76, midline 35.8
Pedunculopontine tegmental nucleus
nTPM: 35.4
2334 Male, age 80, both hemispheres 37.2
1921 Female, age 85, both hemispheres 35.4
2338 Male, age 61, both hemispheres 33.7
Periaquaductal grey, anterior
nTPM: 37.1
1947 Male, age 18, unknown 38.4
1795 Male, age 51, unknown 37.1
2502 Female, age 75, unknown 35.7
Periaquaductal grey, dorsal
nTPM: 35.9
2850 Male, age 76, both hemispheres 40.7
2464 Female, age 72, unknown 34.6
1840 Male, age 53, unknown 34.5
1831 Male, age 72, unknown 33.7
Periaquaductal grey, lateral
nTPM: 35.5
2140 Male, age 76, both hemispheres 39.0
2053 Male, age 18, unknown 34.0
2272 Male, age 74, both hemispheres 33.5
Pretectal area
nTPM: 36.5
1817 Female, age 42, unknown 42.0
2007 Male, age 72, unknown 40.0
2407 Male, age 75, both hemispheres 37.3
1816 Male, age 51, unknown 36.4
2316 Male, age 76, right hemisphere 36.1
1815 Male, age 53, unknown 35.6
2667 Female, age 75, unknown 35.6
1944 Female, age 72, unknown 35.2
2273 Male, age 74, both hemispheres 35.1
2825 Male, age 18, unknown 34.7
2224 Female, age 72, unknown 33.0
Red nucleus
nTPM: 40.4
1954 Female, age 42, unknown 43.4
1865 Male, age 51, unknown 43.1
1821 Female, age 72, unknown 42.4
1904 Male, age 53, unknown 42.1
2785 Male, age 18, unknown 41.8
2227 Male, age 72, unknown 41.3
2588 Male, age 74, left hemisphere 41.2
2769 Male, age 72, unknown 41.0
2503 Female, age 72, unknown 38.3
2725 Female, age 75, unknown 37.8
2823 Male, age 76, right hemisphere 37.0
2584 Male, age 75, left hemisphere 35.5
Substantia nigra
nTPM: 35.4
2583 Male, age 75, right hemisphere 40.1
1889 Female, age 72, unknown 38.9
1941 Male, age 53, unknown 35.7
1851 Male, age 51, unknown 35.3
2590 Female, age 75, unknown 35.1
2699 Male, age 18, unknown 34.9
1916 Female, age 42, unknown 34.4
2665 Male, age 74, both hemispheres 33.7
2241 Male, age 72, unknown 32.9
2409 Female, age 72, unknown 32.8
Superior colliculus
nTPM: 36.8
2668 Female, age 75, unknown 41.6
2664 Male, age 75, both hemispheres 40.5
1995 Male, age 72, unknown 38.9
1796 Male, age 53, unknown 36.8
1895 Male, age 76, right hemisphere 36.6
1839 Male, age 51, unknown 35.5
2587 Male, age 74, left hemisphere 35.2
2261 Male, age 18, unknown 34.4
1913 Female, age 42, unknown 34.3
2087 Female, age 72, unknown 34.3
Ventral tegmental area
nTPM: 35.4
2223 Female, age 72, unknown 36.7
1942 Male, age 51, unknown 35.9
2410 Female, age 72, unknown 35.5
2021 Male, age 53, unknown 35.2
2218 Male, age 76, both hemispheres 34.5
1915 Female, age 42, unknown 34.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.4
Samples: 139

Max nTPM: 112.1
Min nTPM: 14.7
Std nTPM: 14.8
Median nTPM: 30.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 112.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 109.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 87.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 68.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 66.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 65.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 62.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 56.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 56.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 54.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 54.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.4
FF:10158-103A5 76 years, female 72.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.9
Pig sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 19.6
Min nTPM: 16.5
Sample A Female 16.5
Sample B Female 16.6
Sample C Male 19.6
Sample D Male 19.0
Periaqueductal gray
nTPM: 14.3
Samples: 3

Max nTPM: 17.2
Min nTPM: 12.5
Sample B Female 17.2
Sample C Male 13.3
Sample D Male 12.5
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 17.1
Min nTPM: 14.2
Sample A Female 17.1
Sample B Female 14.3
Sample C Male 14.2
Sample D Male 16.3
Superior colliculi
nTPM: 17.3
Samples: 4

Max nTPM: 23.1
Min nTPM: 11.6
Sample A Female 23.1
Sample B Female 11.6
Sample C Male 17.5
Sample D Male 17.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 20.9
Min nTPM: 16.0
Sample A Male 20.6
Sample B Male 20.9
Sample C Female 16.0
Sample D Female 16.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69885720 Antisense, RP_050512_03_C10, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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