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RAPGEF5
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.8 nTPM
HPA:71.8 nTPM
GTEx:59.3 nTPM
FANTOM5:515.5 Scaled Tags Per Million
Pig:97.8 nTPM
Mouse:33.4 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.4
1830 Male, age 51, unknown 76.0
2411 Female, age 72, unknown 73.0
2019 Male, age 18, unknown 70.9
1870 Female, age 42, unknown 67.9
1833 Male, age 53, unknown 58.0
2828 Female, age 72, unknown 36.6
2666 Male, age 74, left hemisphere 31.1
2219 Male, age 76, both hemispheres 30.1
2586 Male, age 75, left hemisphere 26.9
1827 Male, age 72, unknown 23.7
Dorsal raphe nucleus
nTPM: 33.5
2750 Male, age 76, both hemispheres 82.6
1828 Male, age 53, unknown 28.1
2016 Female, age 72, unknown 28.0
2047 Male, age 72, unknown 19.1
2298 Female, age 72, unknown 9.6
Inferior colliculus
nTPM: 26.6
1890 Male, age 53, unknown 34.2
1848 Female, age 42, unknown 28.6
2097 Female, age 72, unknown 24.4
2849 Male, age 72, unknown 19.1
Median raphe nucleus
nTPM: 34.4
2220 Male, age 76, midline 34.4
Pedunculopontine tegmental nucleus
nTPM: 42.6
2338 Male, age 61, both hemispheres 47.6
2334 Male, age 80, both hemispheres 44.4
1921 Female, age 85, both hemispheres 35.7
Periaquaductal grey, anterior
nTPM: 19.2
2502 Female, age 75, unknown 29.6
1947 Male, age 18, unknown 19.1
1795 Male, age 51, unknown 8.9
Periaquaductal grey, dorsal
nTPM: 11.7
2464 Female, age 72, unknown 31.2
1831 Male, age 72, unknown 14.3
1840 Male, age 53, unknown 1.2
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 12.9
2272 Male, age 74, both hemispheres 20.6
2053 Male, age 18, unknown 17.4
2140 Male, age 76, both hemispheres 0.7
Pretectal area
nTPM: 20.4
2407 Male, age 75, both hemispheres 32.3
1815 Male, age 53, unknown 29.5
2316 Male, age 76, right hemisphere 27.6
2667 Female, age 75, unknown 24.0
2007 Male, age 72, unknown 22.4
2825 Male, age 18, unknown 22.1
2273 Male, age 74, both hemispheres 20.8
1817 Female, age 42, unknown 20.0
2224 Female, age 72, unknown 12.5
1944 Female, age 72, unknown 8.6
1816 Male, age 51, unknown 4.7
Red nucleus
nTPM: 71.8
1865 Male, age 51, unknown 97.3
1821 Female, age 72, unknown 89.7
2227 Male, age 72, unknown 80.1
2769 Male, age 72, unknown 79.3
1904 Male, age 53, unknown 76.5
2785 Male, age 18, unknown 75.0
2588 Male, age 74, left hemisphere 71.3
1954 Female, age 42, unknown 67.3
2823 Male, age 76, right hemisphere 67.3
2503 Female, age 72, unknown 65.5
2584 Male, age 75, left hemisphere 58.7
2725 Female, age 75, unknown 34.1
Substantia nigra
nTPM: 34.4
2583 Male, age 75, right hemisphere 52.4
1851 Male, age 51, unknown 43.8
2409 Female, age 72, unknown 43.6
2241 Male, age 72, unknown 36.6
1889 Female, age 72, unknown 35.3
1941 Male, age 53, unknown 34.7
2699 Male, age 18, unknown 28.2
2590 Female, age 75, unknown 27.4
1916 Female, age 42, unknown 23.5
2665 Male, age 74, both hemispheres 18.6
Superior colliculus
nTPM: 31.5
1913 Female, age 42, unknown 56.8
1995 Male, age 72, unknown 44.3
2587 Male, age 74, left hemisphere 44.0
2668 Female, age 75, unknown 40.9
1895 Male, age 76, right hemisphere 36.6
1839 Male, age 51, unknown 35.9
1796 Male, age 53, unknown 22.3
2087 Female, age 72, unknown 14.0
2664 Male, age 75, both hemispheres 11.7
2261 Male, age 18, unknown 9.0
Ventral tegmental area
nTPM: 47.8
2223 Female, age 72, unknown 93.1
2410 Female, age 72, unknown 60.0
1942 Male, age 51, unknown 38.0
2021 Male, age 53, unknown 35.8
2218 Male, age 76, both hemispheres 33.1
1915 Female, age 42, unknown 26.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.3
Samples: 139

Max nTPM: 241.1
Min nTPM: 10.8
Std nTPM: 35.3
Median nTPM: 49.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 241.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 180.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 178.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 163.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 161.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 136.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 136.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 132.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 125.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 124.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 118.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 515.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 515.5
FF:10158-103A5 76 years, female 515.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 97.8
Pig sample Sample description nTPM
Midbrain
nTPM: 97.8
Samples: 4

Max nTPM: 243.8
Min nTPM: 40.1
Sample A Female 243.8
Sample B Female 64.6
Sample C Male 40.1
Sample D Male 42.7
Periaqueductal gray
nTPM: 43.4
Samples: 3

Max nTPM: 54.4
Min nTPM: 31.4
Sample B Female 54.4
Sample C Male 31.4
Sample D Male 44.4
Substantia nigra
nTPM: 75.7
Samples: 4

Max nTPM: 115.4
Min nTPM: 40.6
Sample A Female 86.3
Sample B Female 40.6
Sample C Male 60.3
Sample D Male 115.4
Superior colliculi
nTPM: 59.6
Samples: 4

Max nTPM: 75.9
Min nTPM: 33.5
Sample A Female 71.1
Sample B Female 33.5
Sample C Male 57.9
Sample D Male 75.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 35.9
Min nTPM: 30.7
Sample A Male 30.7
Sample B Male 35.5
Sample C Female 35.9
Sample D Female 31.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
69012789 Antisense, RP_050309_01_E03, Mouse strain C57BL/6J (56 days, male) 3.7
70301084 Antisense, RP_050309_01_E03, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.