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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:50.2 nTPM
HPA:50.2 nTPM
GTEx:28.4 nTPM
FANTOM5:105.2 Scaled Tags Per Million
Pig:33.5 nTPM
Mouse:13.4 nTPM
Allen mouse:1.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA020981Antibody HPA079208
Glial cells MediumMedium
Neuronal cells MediumHigh


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.3
2288 Male, age 75, left hemisphere 28.1
1781 Male, age 74, unknown 15.7
2846 Female, age 79, unknown 15.1
2290 Female, age 72, unknown 13.1
2289 Male, age 61, right hemisphere 11.6
1854 Male, age 80, left hemisphere 9.8
1857 Female, age 85, left hemisphere 7.8
2481 Female, age 94, left hemisphere 5.4
Claustrum
nTPM: 36.4
2292 Female, age 85, both hemispheres 58.0
1956 Male, age 74, unknown 45.8
2568 Male, age 61, both hemispheres 38.8
2284 Female, age 91, both hemispheres 33.4
2645 Female, age 72, unknown 32.9
2198 Male, age 80, both hemispheres 32.6
2196 Female, age 79, unknown 31.9
2491 Male, age 75, both hemispheres 29.8
2392 Female, age 94, both hemispheres 24.7
Globus pallidus, externus
nTPM: 50.2
2646 Male, age 61, right hemisphere 63.8
2567 Female, age 72, unknown 56.5
1996 Male, age 80, right hemisphere 48.8
2772 Female, age 79, unknown 45.3
2395 Male, age 75, both hemispheres 36.5
Globus pallidus, internus
nTPM: 49.6
2111 Female, age 85, right hemisphere 75.4
2287 Male, age 75, right hemisphere 58.8
2566 Female, age 72, unknown 56.1
2778 Female, age 91, both hemispheres 53.9
1818 Male, age 74, unknown 45.5
2037 Male, age 80, right hemisphere 42.2
2483 Female, age 94, right hemisphere 15.7
Nucleus accumbens
nTPM: 18.7
2698 Female, age 72, unknown 27.5
2391 Female, age 94, left hemisphere 25.2
2732 Male, age 80, right hemisphere 24.7
2286 Male, age 75, left hemisphere 22.2
1783 Male, age 74, unknown 15.7
1806 Female, age 85, left hemisphere 15.2
2824 Male, age 61, right hemisphere 13.5
1856 Female, age 91, right hemisphere 5.9
Nucleus basalis of Meynert
nTPM: 24.5
2569 Male, age 61, both hemispheres 49.2
2821 Male, age 75, both hemispheres 26.7
2393 Male, age 80, right hemisphere 11.1
2484 Female, age 94, left hemisphere 11.0
Nucleus of the diagonal band
nTPM: 14.1
2029 Male, age 61, right hemisphere 16.8
2195 Female, age 85, both hemispheres 15.2
1812 Female, age 91, both hemispheres 13.1
1979 Male, age 74, unknown 12.6
2775 Male, age 80, right hemisphere 12.5
Olfactory tubercle
nTPM: 16.1
2487 Female, age 94, left hemisphere 23.7
2856 Male, age 75, right hemisphere 15.7
1998 Female, age 91, both hemispheres 14.6
1846 Male, age 80, right hemisphere 10.2
Putamen
nTPM: 18.3
2647 Male, age 75, left hemisphere 35.9
1829 Male, age 74, unknown 25.1
2489 Female, age 72, unknown 25.1
2482 Female, age 94, left hemisphere 13.4
2466 Female, age 79, unknown 12.2
1937 Female, age 91, right hemisphere 11.8
1838 Male, age 80, right hemisphere 4.8
Septal nuclei
nTPM: 17.4
2394 Male, age 61, left hemisphere 33.7
2629 Female, age 94, right hemisphere 21.5
2199 Male, age 80, right hemisphere 17.1
2059 Female, age 85, both hemispheres 15.9
1960 Male, age 74, unknown 14.6
2031 Female, age 72, unknown 9.7
2009 Female, age 91, both hemispheres 8.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.3
Samples: 246

Max nTPM: 43.5
Min nTPM: 10.6
Std nTPM: 6.2
Median nTPM: 21.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 43.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 42.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 40.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 39.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 39.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 38.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 36.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 36.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 35.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 34.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 33.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.3
Samples: 246

Max nTPM: 59.2
Min nTPM: 7.9
Std nTPM: 6.5
Median nTPM: 19.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 59.2
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 45.5
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 44.0
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 42.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 41.9
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 41.0
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 40.5
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 39.1
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 34.5
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 33.9
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 32.9
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Brain - Putamen (basal ganglia)
Average nTPM: 28.4
Samples: 205

Max nTPM: 82.3
Min nTPM: 12.8
Std nTPM: 9.1
Median nTPM: 26.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 82.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 65.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 52.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 51.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 49.3
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 48.9
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 47.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 45.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 45.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 44.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 44.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.4
FF:10164-103B2 76 years, female 40.4
Globus pallidus
Scaled Tags Per Million: 105.2
FF:10161-103A8 76 years, female 121.2
FF:10175-103C4 60 years, female 89.1
Nucleus accumbens
Scaled Tags Per Million: 96.9
FF:10037-101F1 23-56 years, mixed 96.9
Putamen
Scaled Tags Per Million: 58.6
FF:10176-103C5 60 years, female 58.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 33.5
Pig sample Sample description nTPM
Caudate
nTPM: 23.6
Samples: 4

Max nTPM: 30.9
Min nTPM: 15.8
Sample A Female 15.8
Sample B Female 23.8
Sample C Male 30.9
Sample D Male 23.9
Putamen
nTPM: 33.5
Samples: 4

Max nTPM: 38.8
Min nTPM: 22.9
Sample A Female 33.9
Sample B Female 22.9
Sample C Male 38.2
Sample D Male 38.8
Septum
nTPM: 20.6
Samples: 4

Max nTPM: 33.6
Min nTPM: 13.5
Sample A Female 18.3
Sample B Female 17.1
Sample C Male 33.6
Sample D Male 13.5
Ventral pallidum
nTPM: 29.3
Samples: 4

Max nTPM: 54.8
Min nTPM: 16.0
Sample A Female 16.0
Sample B Female 18.4
Sample C Male 54.8
Sample D Male 28.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 13.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.4
Samples: 4

Max nTPM: 14.2
Min nTPM: 12.4
Sample A Male 14.2
Sample B Male 14.2
Sample C Female 12.6
Sample D Female 12.4
Septum
nTPM: 11.3
Samples: 4

Max nTPM: 12.9
Min nTPM: 8.7
Sample A Male 12.9
Sample B Male 8.7
Sample C Female 12.0
Sample D Female 11.4
Ventral forebrain
nTPM: 13.4
Samples: 4

Max nTPM: 14.1
Min nTPM: 11.9
Sample A Male 14.1
Sample B Male 13.8
Sample C Female 11.9
Sample D Female 13.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
70565867 Antisense, RP_050628_01_E07, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 1.5
70565867 Antisense, RP_050628_01_E07, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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