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LRRC8A
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.4 nTPM
HPA:69.4 nTPM
GTEx:54.5 nTPM
FANTOM5:66.7 Scaled Tags Per Million
Pig:22.8 nTPM
Mouse:15.8 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 69.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 52.7
2288 Male, age 75, left hemisphere 60.6
2481 Female, age 94, left hemisphere 59.3
2290 Female, age 72, unknown 55.5
1781 Male, age 74, unknown 50.9
1854 Male, age 80, left hemisphere 50.3
1857 Female, age 85, left hemisphere 50.3
2289 Male, age 61, right hemisphere 49.3
2846 Female, age 79, unknown 45.4
Claustrum
nTPM: 50.9
2645 Female, age 72, unknown 56.2
2284 Female, age 91, both hemispheres 55.4
2198 Male, age 80, both hemispheres 53.2
2491 Male, age 75, both hemispheres 52.6
2568 Male, age 61, both hemispheres 51.8
2196 Female, age 79, unknown 48.7
1956 Male, age 74, unknown 47.5
2392 Female, age 94, both hemispheres 47.3
2292 Female, age 85, both hemispheres 45.2
Globus pallidus, externus
nTPM: 69.4
2646 Male, age 61, right hemisphere 88.2
1996 Male, age 80, right hemisphere 73.1
2567 Female, age 72, unknown 68.9
2772 Female, age 79, unknown 64.2
2395 Male, age 75, both hemispheres 52.5
Globus pallidus, internus
nTPM: 67.3
1818 Male, age 74, unknown 73.8
2483 Female, age 94, right hemisphere 73.0
2287 Male, age 75, right hemisphere 69.4
2111 Female, age 85, right hemisphere 67.2
2037 Male, age 80, right hemisphere 66.9
2778 Female, age 91, both hemispheres 61.2
2566 Female, age 72, unknown 59.5
Nucleus accumbens
nTPM: 50.9
2286 Male, age 75, left hemisphere 62.1
2732 Male, age 80, right hemisphere 53.6
1806 Female, age 85, left hemisphere 52.2
2391 Female, age 94, left hemisphere 50.0
1783 Male, age 74, unknown 49.4
2698 Female, age 72, unknown 48.3
1856 Female, age 91, right hemisphere 46.3
2824 Male, age 61, right hemisphere 45.3
Nucleus basalis of Meynert
nTPM: 58.8
2569 Male, age 61, both hemispheres 87.2
2484 Female, age 94, left hemisphere 51.5
2393 Male, age 80, right hemisphere 49.5
2821 Male, age 75, both hemispheres 46.9
Nucleus of the diagonal band
nTPM: 53.5
1979 Male, age 74, unknown 62.3
2195 Female, age 85, both hemispheres 54.1
1812 Female, age 91, both hemispheres 53.7
2775 Male, age 80, right hemisphere 52.5
2029 Male, age 61, right hemisphere 44.8
Olfactory tubercle
nTPM: 54.0
2856 Male, age 75, right hemisphere 57.8
2487 Female, age 94, left hemisphere 54.6
1846 Male, age 80, right hemisphere 54.1
1998 Female, age 91, both hemispheres 49.4
Putamen
nTPM: 53.6
2647 Male, age 75, left hemisphere 71.7
2489 Female, age 72, unknown 57.4
1829 Male, age 74, unknown 53.4
2482 Female, age 94, left hemisphere 51.3
1937 Female, age 91, right hemisphere 48.8
2466 Female, age 79, unknown 46.8
1838 Male, age 80, right hemisphere 46.1
Septal nuclei
nTPM: 58.1
2059 Female, age 85, both hemispheres 70.2
2199 Male, age 80, right hemisphere 63.7
2394 Male, age 61, left hemisphere 59.6
1960 Male, age 74, unknown 57.9
2009 Female, age 91, both hemispheres 53.5
2031 Female, age 72, unknown 52.2
2629 Female, age 94, right hemisphere 49.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 54.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 54.5
Samples: 246

Max nTPM: 133.8
Min nTPM: 14.4
Std nTPM: 20.4
Median nTPM: 51.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 133.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 124.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 123.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 114.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 107.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 104.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 103.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 101.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 98.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 96.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 95.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.6
Samples: 246

Max nTPM: 151.9
Min nTPM: 19.6
Std nTPM: 21.0
Median nTPM: 44.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 151.9
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 129.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 120.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 118.0
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 110.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 108.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 107.6
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 105.7
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 104.4
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 97.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 95.7
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Brain - Putamen (basal ganglia)
Average nTPM: 54.2
Samples: 205

Max nTPM: 142.6
Min nTPM: 15.3
Std nTPM: 22.2
Median nTPM: 50.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 142.6
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 130.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 129.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 124.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 113.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 111.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 109.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 106.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 106.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 102.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 92.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 66.7
FF:10164-103B2 76 years, female 66.7
Globus pallidus
Scaled Tags Per Million: 59.8
FF:10161-103A8 76 years, female 64.5
FF:10175-103C4 60 years, female 55.2
Nucleus accumbens
Scaled Tags Per Million: 58.0
FF:10037-101F1 23-56 years, mixed 58.0
Putamen
Scaled Tags Per Million: 62.0
FF:10176-103C5 60 years, female 62.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.8
Pig sample Sample description nTPM
Caudate
nTPM: 14.2
Samples: 4

Max nTPM: 16.5
Min nTPM: 10.6
Sample A Female 10.6
Sample B Female 15.5
Sample C Male 16.5
Sample D Male 14.3
Putamen
nTPM: 22.8
Samples: 4

Max nTPM: 27.9
Min nTPM: 18.1
Sample A Female 27.9
Sample B Female 18.1
Sample C Male 25.6
Sample D Male 19.7
Septum
nTPM: 18.5
Samples: 4

Max nTPM: 30.5
Min nTPM: 14.0
Sample A Female 14.3
Sample B Female 15.2
Sample C Male 30.5
Sample D Male 14.0
Ventral pallidum
nTPM: 20.1
Samples: 4

Max nTPM: 40.4
Min nTPM: 11.3
Sample A Female 11.3
Sample B Female 15.9
Sample C Male 40.4
Sample D Male 12.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.2
Samples: 4

Max nTPM: 14.4
Min nTPM: 12.1
Sample A Male 13.4
Sample B Male 14.4
Sample C Female 12.1
Sample D Female 13.0
Septum
nTPM: 15.8
Samples: 4

Max nTPM: 18.3
Min nTPM: 12.9
Sample A Male 17.3
Sample B Male 12.9
Sample C Female 14.6
Sample D Female 18.3
Ventral forebrain
nTPM: 14.6
Samples: 4

Max nTPM: 16.6
Min nTPM: 13.4
Sample A Male 13.4
Sample B Male 16.6
Sample C Female 14.4
Sample D Female 14.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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