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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:0.8 nTPM
HPA:0.8 nTPM
GTEx:1.8 nTPM
FANTOM5:28.9 Scaled Tags Per Million
Pig:12.5 nTPM
Mouse:4.9 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA068012
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.7
2289 Male, age 61, right hemisphere 2.0
1781 Male, age 74, unknown 0.8
2290 Female, age 72, unknown 0.7
2846 Female, age 79, unknown 0.7
1854 Male, age 80, left hemisphere 0.5
2288 Male, age 75, left hemisphere 0.5
2481 Female, age 94, left hemisphere 0.5
1857 Female, age 85, left hemisphere 0.3
Claustrum
nTPM: 0.6
2196 Female, age 79, unknown 1.0
2491 Male, age 75, both hemispheres 0.7
2198 Male, age 80, both hemispheres 0.6
1956 Male, age 74, unknown 0.5
2292 Female, age 85, both hemispheres 0.5
2645 Female, age 72, unknown 0.5
2284 Female, age 91, both hemispheres 0.4
2392 Female, age 94, both hemispheres 0.4
2568 Male, age 61, both hemispheres 0.4
Globus pallidus, externus
nTPM: 0.6
1996 Male, age 80, right hemisphere 0.9
2395 Male, age 75, both hemispheres 0.7
2772 Female, age 79, unknown 0.7
2646 Male, age 61, right hemisphere 0.4
2567 Female, age 72, unknown 0.3
Globus pallidus, internus
nTPM: 0.6
2037 Male, age 80, right hemisphere 0.9
2287 Male, age 75, right hemisphere 0.8
2111 Female, age 85, right hemisphere 0.7
1818 Male, age 74, unknown 0.5
2483 Female, age 94, right hemisphere 0.5
2778 Female, age 91, both hemispheres 0.5
2566 Female, age 72, unknown 0.4
Nucleus accumbens
nTPM: 0.7
2732 Male, age 80, right hemisphere 2.1
2698 Female, age 72, unknown 0.7
2391 Female, age 94, left hemisphere 0.6
2824 Male, age 61, right hemisphere 0.6
1783 Male, age 74, unknown 0.5
1856 Female, age 91, right hemisphere 0.4
2286 Male, age 75, left hemisphere 0.4
1806 Female, age 85, left hemisphere 0.1
Nucleus basalis of Meynert
nTPM: 0.3
2484 Female, age 94, left hemisphere 0.3
2569 Male, age 61, both hemispheres 0.3
2821 Male, age 75, both hemispheres 0.3
2393 Male, age 80, right hemisphere 0.2
Nucleus of the diagonal band
nTPM: 0.5
1979 Male, age 74, unknown 0.7
2195 Female, age 85, both hemispheres 0.7
2029 Male, age 61, right hemisphere 0.6
1812 Female, age 91, both hemispheres 0.4
2775 Male, age 80, right hemisphere 0.2
Olfactory tubercle
nTPM: 0.3
2487 Female, age 94, left hemisphere 0.4
1846 Male, age 80, right hemisphere 0.3
2856 Male, age 75, right hemisphere 0.3
1998 Female, age 91, both hemispheres 0.1
Putamen
nTPM: 0.4
1829 Male, age 74, unknown 0.6
2466 Female, age 79, unknown 0.5
2489 Female, age 72, unknown 0.5
2647 Male, age 75, left hemisphere 0.5
2482 Female, age 94, left hemisphere 0.3
1937 Female, age 91, right hemisphere 0.2
1838 Male, age 80, right hemisphere 0.1
Septal nuclei
nTPM: 0.8
2199 Male, age 80, right hemisphere 1.7
2009 Female, age 91, both hemispheres 1.4
2629 Female, age 94, right hemisphere 0.7
1960 Male, age 74, unknown 0.6
2059 Female, age 85, both hemispheres 0.6
2394 Male, age 61, left hemisphere 0.5
2031 Female, age 72, unknown 0.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.8
Samples: 246

Max nTPM: 43.9
Min nTPM: 0.0
Std nTPM: 4.7
Median nTPM: 0.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 43.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 33.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 31.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 23.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 21.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 19.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 14.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 9.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 8.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 7.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 7.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.1
Samples: 246

Max nTPM: 17.0
Min nTPM: 0.0
Std nTPM: 2.0
Median nTPM: 0.6
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 17.0
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 14.1
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 13.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 12.2
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 9.7
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 8.4
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 8.4
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 6.5
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 4.6
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 3.3
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 3.1
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Brain - Putamen (basal ganglia)
Average nTPM: 0.6
Samples: 205

Max nTPM: 3.5
Min nTPM: 0.0
Std nTPM: 0.5
Median nTPM: 0.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 3.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 2.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 2.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 2.0
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 2.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 1.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 1.8
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 1.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 1.7
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 1.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.9
FF:10164-103B2 76 years, female 28.9
Globus pallidus
Scaled Tags Per Million: 11.4
FF:10175-103C4 60 years, female 14.2
FF:10161-103A8 76 years, female 8.6
Nucleus accumbens
Scaled Tags Per Million: 13.8
FF:10037-101F1 23-56 years, mixed 13.8
Putamen
Scaled Tags Per Million: 13.0
FF:10176-103C5 60 years, female 13.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.5
Pig sample Sample description nTPM
Caudate
nTPM: 12.5
Samples: 4

Max nTPM: 14.6
Min nTPM: 10.4
Sample A Female 12.2
Sample B Female 12.9
Sample C Male 14.6
Sample D Male 10.4
Putamen
nTPM: 11.7
Samples: 4

Max nTPM: 13.2
Min nTPM: 9.6
Sample A Female 12.4
Sample B Female 9.6
Sample C Male 13.2
Sample D Male 11.7
Septum
nTPM: 12.0
Samples: 4

Max nTPM: 14.5
Min nTPM: 10.5
Sample A Female 11.2
Sample B Female 10.5
Sample C Male 11.7
Sample D Male 14.5
Ventral pallidum
nTPM: 10.6
Samples: 4

Max nTPM: 11.9
Min nTPM: 8.8
Sample A Female 8.8
Sample B Female 10.6
Sample C Male 11.9
Sample D Male 10.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.5
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.0
Sample A Male 2.3
Sample B Male 1.1
Sample C Female 1.0
Sample D Female 1.4
Septum
nTPM: 5.0
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.4
Sample A Male 3.4
Sample B Male 5.8
Sample C Female 5.7
Sample D Female 4.9
Ventral forebrain
nTPM: 0.7
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.2
Sample A Male 0.2
Sample B Male 1.3
Sample C Female 0.6
Sample D Female 0.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
74514067 Antisense, RP_060208_01_H10, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74514067 Antisense, RP_060208_01_H10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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