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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:349.9 nTPM
HPA:349.9 nTPM
GTEx:463.3 nTPM
FANTOM5:297.4 Scaled Tags Per Million
Pig:424.6 nTPM
Mouse:91.6 nTPM
Allen mouse:25.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 349.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 281.8
2586 Male, age 75, left hemisphere 336.7
1870 Female, age 42, unknown 301.7
1833 Male, age 53, unknown 294.6
2411 Female, age 72, unknown 294.1
2828 Female, age 72, unknown 293.8
1830 Male, age 51, unknown 279.6
2219 Male, age 76, both hemispheres 264.3
1827 Male, age 72, unknown 262.5
2666 Male, age 74, left hemisphere 248.3
2019 Male, age 18, unknown 242.6
Dorsal raphe nucleus
nTPM: 343.5
2047 Male, age 72, unknown 370.1
2298 Female, age 72, unknown 345.3
2750 Male, age 76, both hemispheres 343.1
1828 Male, age 53, unknown 340.7
2016 Female, age 72, unknown 318.2
Inferior colliculus
nTPM: 302.9
1848 Female, age 42, unknown 337.1
2849 Male, age 72, unknown 304.0
1890 Male, age 53, unknown 291.0
2097 Female, age 72, unknown 279.5
Median raphe nucleus
nTPM: 349.9
2220 Male, age 76, midline 349.9
Pedunculopontine tegmental nucleus
nTPM: 339.6
2334 Male, age 80, both hemispheres 370.4
2338 Male, age 61, both hemispheres 345.1
1921 Female, age 85, both hemispheres 303.5
Periaquaductal grey, anterior
nTPM: 287.9
1795 Male, age 51, unknown 303.3
1947 Male, age 18, unknown 283.3
2502 Female, age 75, unknown 276.9
Periaquaductal grey, dorsal
nTPM: 298.5
2850 Male, age 76, both hemispheres 345.1
1840 Male, age 53, unknown 320.5
2464 Female, age 72, unknown 279.9
1831 Male, age 72, unknown 248.4
Periaquaductal grey, lateral
nTPM: 299.0
2140 Male, age 76, both hemispheres 321.9
2272 Male, age 74, both hemispheres 298.0
2053 Male, age 18, unknown 277.0
Pretectal area
nTPM: 278.5
2825 Male, age 18, unknown 328.0
2273 Male, age 74, both hemispheres 326.6
2224 Female, age 72, unknown 320.4
2667 Female, age 75, unknown 290.9
1817 Female, age 42, unknown 285.8
2316 Male, age 76, right hemisphere 268.2
1944 Female, age 72, unknown 253.8
1816 Male, age 51, unknown 250.7
1815 Male, age 53, unknown 249.3
2407 Male, age 75, both hemispheres 247.3
2007 Male, age 72, unknown 242.4
Red nucleus
nTPM: 315.9
2227 Male, age 72, unknown 385.6
2769 Male, age 72, unknown 378.5
1954 Female, age 42, unknown 358.5
1821 Female, age 72, unknown 355.8
1904 Male, age 53, unknown 332.1
2503 Female, age 72, unknown 329.4
1865 Male, age 51, unknown 313.8
2823 Male, age 76, right hemisphere 292.0
2588 Male, age 74, left hemisphere 288.7
2725 Female, age 75, unknown 261.2
2785 Male, age 18, unknown 253.7
2584 Male, age 75, left hemisphere 241.8
Substantia nigra
nTPM: 346.7
1916 Female, age 42, unknown 499.5
2699 Male, age 18, unknown 468.5
1851 Male, age 51, unknown 369.2
2241 Male, age 72, unknown 341.0
2590 Female, age 75, unknown 320.2
2665 Male, age 74, both hemispheres 306.5
1941 Male, age 53, unknown 298.7
1889 Female, age 72, unknown 295.8
2409 Female, age 72, unknown 290.6
2583 Male, age 75, right hemisphere 277.4
Superior colliculus
nTPM: 262.7
2668 Female, age 75, unknown 316.2
1796 Male, age 53, unknown 285.4
2587 Male, age 74, left hemisphere 274.3
1839 Male, age 51, unknown 266.9
2261 Male, age 18, unknown 263.0
2087 Female, age 72, unknown 262.5
2664 Male, age 75, both hemispheres 247.7
1995 Male, age 72, unknown 245.6
1895 Male, age 76, right hemisphere 244.5
1913 Female, age 42, unknown 220.7
Ventral tegmental area
nTPM: 343.6
2223 Female, age 72, unknown 391.1
1915 Female, age 42, unknown 377.7
2218 Male, age 76, both hemispheres 333.3
2021 Male, age 53, unknown 326.5
2410 Female, age 72, unknown 318.1
1942 Male, age 51, unknown 315.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 463.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 463.3
Samples: 139

Max nTPM: 2662.3
Min nTPM: 145.2
Std nTPM: 306.8
Median nTPM: 399.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2662.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1927.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1546.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1191.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1134.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1124.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1007.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 980.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 782.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 775.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 764.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 297.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 297.4
FF:10158-103A5 76 years, female 297.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 424.6
Pig sample Sample description nTPM
Midbrain
nTPM: 424.7
Samples: 4

Max nTPM: 612.1
Min nTPM: 305.2
Sample A Female 612.1
Sample B Female 316.9
Sample C Male 464.4
Sample D Male 305.2
Periaqueductal gray
nTPM: 301.0
Samples: 3

Max nTPM: 388.9
Min nTPM: 242.2
Sample B Female 271.9
Sample C Male 388.9
Sample D Male 242.2
Substantia nigra
nTPM: 407.7
Samples: 4

Max nTPM: 666.7
Min nTPM: 211.1
Sample A Female 666.7
Sample B Female 269.4
Sample C Male 483.4
Sample D Male 211.1
Superior colliculi
nTPM: 323.3
Samples: 4

Max nTPM: 425.6
Min nTPM: 170.1
Sample A Female 400.1
Sample B Female 170.1
Sample C Male 425.6
Sample D Male 297.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.7
Samples: 4

Max nTPM: 99.7
Min nTPM: 82.1
Sample A Male 99.7
Sample B Male 90.0
Sample C Female 82.1
Sample D Female 94.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 25.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 25.0
69854163 Antisense, RP_050324_04_C01, Mouse strain C57BL/6J (56 days, male) 26.8
74819689 Antisense, RP_060315_02_H05, Mouse strain C57BL/6J (56 days, male) 25.4
69838608 Antisense, RP_050310_02_C05, Mouse strain C57BL/6J (56 days, male) 22.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.