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TPMT
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:10.4 nTPM
HPA:10.4 nTPM
GTEx:10.9 nTPM
FANTOM5:27.5 Scaled Tags Per Million
Pig:8.1 nTPM
Mouse:25.9 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019851Antibody HPA062364
Glial cells Not detectedLow
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 10.4
Sample id Sample description nTPM
Hippocampus
nTPM: 9.0
1898 Male, age 80, left hemisphere 9.3
2148 Female, age 91, left hemisphere 9.3
2621 Female, age 67, right hemisphere 9.0
2529 Female, age 94, left hemisphere 8.8
1855 Male, age 76, left hemisphere 8.7
1911 Female, age 85, right hemisphere 8.6
Dentate gyrus
nTPM: 9.0
1927 Female, age 91, both hemispheres 9.9
2531 Female, age 67, both hemispheres 9.3
2246 Female, age 85, both hemispheres 9.0
2530 Female, age 94, left hemisphere 8.9
2010 Male, age 76, both hemispheres 8.5
2528 Male, age 74, both hemispheres 8.5
Entorhinal gyrus
nTPM: 8.7
2686 Male, age 75, right hemisphere 9.1
1938 Female, age 85, left hemisphere 8.9
2764 Male, age 80, right hemisphere 8.7
1787 Male, age 76, left hemisphere 8.6
2613 Female, age 94, left hemisphere 8.6
2117 Female, age 91, right hemisphere 8.5
Hippocampus, CA1
nTPM: 9.2
2045 Male, age 76, both hemispheres 9.9
1873 Female, age 85, both hemispheres 9.4
2749 Male, age 80, left hemisphere 9.2
2527 Male, age 74, both hemispheres 8.9
2082 Female, age 91, right hemisphere 8.7
Hippocampus, CA2
nTPM: 9.0
1892 Male, age 76, both hemispheres 9.6
1940 Female, age 85, left hemisphere 9.3
2437 Female, age 94, left hemisphere 9.1
2113 Female, age 91, right hemisphere 8.9
2249 Male, age 74, both hemispheres 8.8
1963 Male, age 80, left hemisphere 8.5
Hippocampus, CA3
nTPM: 9.1
2137 Male, age 80, left hemisphere 9.8
1867 Male, age 76, both hemispheres 9.3
2620 Female, age 94, left hemisphere 9.3
1891 Female, age 85, both hemispheres 9.0
2861 Female, age 67, both hemispheres 8.7
2436 Male, age 74, both hemispheres 8.6
Parahippocampal cortex
nTPM: 9.6
2693 Female, age 94, both hemispheres 10.4
1850 Male, age 80, both hemispheres 10.2
2250 Female, age 67, right hemisphere 10.0
2245 Female, age 91, both hemispheres 9.8
2622 Female, age 67, right hemisphere 9.8
2532 Female, age 72, left hemisphere 9.6
2018 Male, age 76, both hemispheres 9.2
1933 Female, age 85, both hemispheres 9.1
2692 Male, age 74, both hemispheres 8.9
1990 Female, age 91, right hemisphere 8.8
Perirhinal gyrus
nTPM: 10.4
1841 Female, age 85, right hemisphere 11.7
1794 Male, age 80, right hemisphere 10.7
2521 Female, age 94, right hemisphere 10.3
2848 Male, age 76, right hemisphere 9.7
1847 Female, age 91, left hemisphere 9.6
Subiculum
nTPM: 8.6
2729 Female, age 91, right hemisphere 9.1
1977 Female, age 85, both hemispheres 8.9
1901 Male, age 80, both hemispheres 8.7
2619 Male, age 74, both hemispheres 8.7
2042 Male, age 76, both hemispheres 8.3
2438 Female, age 94, left hemisphere 7.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.9
Samples: 197

Max nTPM: 24.3
Min nTPM: 6.4
Std nTPM: 3.2
Median nTPM: 10.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 24.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 24.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 23.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 20.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 20.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 20.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 19.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 19.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 18.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 17.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 16.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.5
FF:10153-102I9 76 years, female 28.8
FF:10169-103B7 60 years, female 26.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.0
Samples: 4

Max nTPM: 10.7
Min nTPM: 5.6
Sample A Female 10.7
Sample B Female 5.6
Sample C Male 6.1
Sample D Male 5.7
Entorhinal cortex
nTPM: 8.2
Samples: 4

Max nTPM: 10.7
Min nTPM: 6.5
Sample A Female 8.0
Sample B Female 10.7
Sample C Male 7.4
Sample D Male 6.5
Subiculum
nTPM: 5.6
Samples: 4

Max nTPM: 8.9
Min nTPM: 4.2
Sample A Female 8.9
Sample B Female 4.3
Sample C Male 4.2
Sample D Male 5.1
Ventral hippocampus
nTPM: 5.6
Samples: 4

Max nTPM: 8.1
Min nTPM: 4.7
Sample A Female 8.1
Sample B Female 4.8
Sample C Male 4.8
Sample D Male 4.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.8
Samples: 4

Max nTPM: 28.7
Min nTPM: 23.9
Sample A Male 23.9
Sample B Male 25.7
Sample C Female 25.0
Sample D Female 28.7
Hippocampal formation
nTPM: 23.1
Samples: 4

Max nTPM: 27.7
Min nTPM: 16.9
Sample A Male 27.7
Sample B Male 16.9
Sample C Female 22.1
Sample D Female 25.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
76098337 Antisense, RP_060626_01_E12, Mouse strain C57BL/6J (56 days, male) 0.1

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