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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:29.0 nTPM
HPA:29.0 nTPM
GTEx:12.0 nTPM
FANTOM5:32.2 Scaled Tags Per Million
Pig:39.7 nTPM
Mouse:7.8 nTPM
Allen mouse:2.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039651
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 29.0
Sample id Sample description nTPM
Hippocampus
nTPM: 6.2
1898 Male, age 80, left hemisphere 10.8
1855 Male, age 76, left hemisphere 9.4
2529 Female, age 94, left hemisphere 6.1
2621 Female, age 67, right hemisphere 5.2
1911 Female, age 85, right hemisphere 3.9
2148 Female, age 91, left hemisphere 1.9
Dentate gyrus
nTPM: 5.7
2010 Male, age 76, both hemispheres 9.9
2530 Female, age 94, left hemisphere 6.7
2246 Female, age 85, both hemispheres 6.6
2531 Female, age 67, both hemispheres 4.9
2528 Male, age 74, both hemispheres 4.4
1927 Female, age 91, both hemispheres 1.6
Entorhinal gyrus
nTPM: 17.8
2764 Male, age 80, right hemisphere 26.3
2686 Male, age 75, right hemisphere 20.2
2613 Female, age 94, left hemisphere 19.1
1938 Female, age 85, left hemisphere 18.5
2117 Female, age 91, right hemisphere 12.0
1787 Male, age 76, left hemisphere 10.9
Hippocampus, CA1
nTPM: 6.4
2082 Female, age 91, right hemisphere 8.5
2045 Male, age 76, both hemispheres 7.9
2527 Male, age 74, both hemispheres 6.9
1873 Female, age 85, both hemispheres 5.8
2749 Male, age 80, left hemisphere 3.2
Hippocampus, CA2
nTPM: 5.9
2113 Female, age 91, right hemisphere 8.4
2437 Female, age 94, left hemisphere 7.1
1940 Female, age 85, left hemisphere 6.0
2249 Male, age 74, both hemispheres 5.3
1963 Male, age 80, left hemisphere 4.5
1892 Male, age 76, both hemispheres 3.9
Hippocampus, CA3
nTPM: 4.8
1891 Female, age 85, both hemispheres 8.4
2436 Male, age 74, both hemispheres 7.5
1867 Male, age 76, both hemispheres 5.3
2861 Female, age 67, both hemispheres 3.4
2137 Male, age 80, left hemisphere 2.4
2620 Female, age 94, left hemisphere 2.0
Parahippocampal cortex
nTPM: 23.3
1850 Male, age 80, both hemispheres 36.2
2532 Female, age 72, left hemisphere 29.8
2622 Female, age 67, right hemisphere 28.4
2693 Female, age 94, both hemispheres 27.9
1933 Female, age 85, both hemispheres 26.2
2245 Female, age 91, both hemispheres 23.9
2692 Male, age 74, both hemispheres 16.7
2018 Male, age 76, both hemispheres 15.7
1990 Female, age 91, right hemisphere 15.3
2250 Female, age 67, right hemisphere 12.6
Perirhinal gyrus
nTPM: 29.0
1841 Female, age 85, right hemisphere 39.1
1794 Male, age 80, right hemisphere 37.3
2848 Male, age 76, right hemisphere 24.1
1847 Female, age 91, left hemisphere 23.6
2521 Female, age 94, right hemisphere 21.1
Subiculum
nTPM: 10.0
1977 Female, age 85, both hemispheres 16.4
2619 Male, age 74, both hemispheres 11.3
1901 Male, age 80, both hemispheres 9.5
2438 Female, age 94, left hemisphere 9.1
2042 Male, age 76, both hemispheres 8.2
2729 Female, age 91, right hemisphere 5.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.0
Samples: 197

Max nTPM: 89.1
Min nTPM: 1.8
Std nTPM: 13.0
Median nTPM: 7.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 89.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 69.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 64.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 61.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 58.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 55.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 52.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 50.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 48.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 43.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 33.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 32.2
FF:10153-102I9 76 years, female 35.2
FF:10169-103B7 60 years, female 29.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 39.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 20.9
Samples: 4

Max nTPM: 25.0
Min nTPM: 15.1
Sample A Female 25.0
Sample B Female 18.3
Sample C Male 15.1
Sample D Male 25.0
Entorhinal cortex
nTPM: 39.7
Samples: 4

Max nTPM: 57.9
Min nTPM: 28.6
Sample A Female 57.9
Sample B Female 33.7
Sample C Male 38.4
Sample D Male 28.6
Subiculum
nTPM: 15.5
Samples: 4

Max nTPM: 24.1
Min nTPM: 12.1
Sample A Female 24.1
Sample B Female 13.0
Sample C Male 12.8
Sample D Male 12.1
Ventral hippocampus
nTPM: 18.9
Samples: 4

Max nTPM: 27.1
Min nTPM: 13.0
Sample A Female 27.1
Sample B Female 13.0
Sample C Male 17.9
Sample D Male 17.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 7.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.8
Samples: 4

Max nTPM: 7.4
Min nTPM: 2.7
Sample A Male 7.4
Sample B Male 7.3
Sample C Female 5.9
Sample D Female 2.7
Hippocampal formation
nTPM: 7.8
Samples: 4

Max nTPM: 9.0
Min nTPM: 6.2
Sample A Male 6.2
Sample B Male 8.6
Sample C Female 9.0
Sample D Female 7.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.7
69976478 Antisense, RP_050512_03_H12, Mouse strain C57BL/6J (56 days, male) 5.3
73520979 Antisense, RP_051017_04_F07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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