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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.1 nTPM
HPA:82.1 nTPM
GTEx:52.9 nTPM
FANTOM5:99.0 Scaled Tags Per Million
Pig:22.4 nTPM
Mouse:7.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.2
2019 Male, age 18, unknown 81.1
2586 Male, age 75, left hemisphere 80.6
2828 Female, age 72, unknown 80.1
2666 Male, age 74, left hemisphere 77.8
2411 Female, age 72, unknown 76.6
1833 Male, age 53, unknown 76.3
1827 Male, age 72, unknown 76.1
1870 Female, age 42, unknown 75.8
1830 Male, age 51, unknown 74.2
2219 Male, age 76, both hemispheres 73.0
Dorsal raphe nucleus
nTPM: 80.2
1828 Male, age 53, unknown 84.4
2298 Female, age 72, unknown 84.1
2016 Female, age 72, unknown 81.6
2047 Male, age 72, unknown 78.7
2750 Male, age 76, both hemispheres 72.3
Inferior colliculus
nTPM: 80.8
2097 Female, age 72, unknown 86.1
1848 Female, age 42, unknown 81.1
1890 Male, age 53, unknown 80.1
2849 Male, age 72, unknown 75.8
Median raphe nucleus
nTPM: 71.5
2220 Male, age 76, midline 71.5
Pedunculopontine tegmental nucleus
nTPM: 73.3
1921 Female, age 85, both hemispheres 74.2
2334 Male, age 80, both hemispheres 73.1
2338 Male, age 61, both hemispheres 72.6
Periaquaductal grey, anterior
nTPM: 77.0
1947 Male, age 18, unknown 78.0
1795 Male, age 51, unknown 76.6
2502 Female, age 75, unknown 76.6
Periaquaductal grey, dorsal
nTPM: 79.1
1840 Male, age 53, unknown 79.8
2850 Male, age 76, both hemispheres 79.4
2464 Female, age 72, unknown 78.9
1831 Male, age 72, unknown 78.2
Periaquaductal grey, lateral
nTPM: 76.7
2053 Male, age 18, unknown 77.4
2140 Male, age 76, both hemispheres 77.0
2272 Male, age 74, both hemispheres 75.8
Pretectal area
nTPM: 79.5
1817 Female, age 42, unknown 85.7
1944 Female, age 72, unknown 83.3
2273 Male, age 74, both hemispheres 83.2
2667 Female, age 75, unknown 81.4
1815 Male, age 53, unknown 81.3
1816 Male, age 51, unknown 80.6
2007 Male, age 72, unknown 79.8
2224 Female, age 72, unknown 78.4
2316 Male, age 76, right hemisphere 74.5
2825 Male, age 18, unknown 73.4
2407 Male, age 75, both hemispheres 72.5
Red nucleus
nTPM: 79.4
1821 Female, age 72, unknown 86.0
2503 Female, age 72, unknown 84.1
2725 Female, age 75, unknown 82.4
1954 Female, age 42, unknown 80.6
2785 Male, age 18, unknown 79.8
1865 Male, age 51, unknown 79.5
2588 Male, age 74, left hemisphere 79.0
1904 Male, age 53, unknown 77.6
2823 Male, age 76, right hemisphere 77.6
2769 Male, age 72, unknown 77.5
2227 Male, age 72, unknown 77.3
2584 Male, age 75, left hemisphere 71.4
Substantia nigra
nTPM: 82.1
1916 Female, age 42, unknown 91.1
2241 Male, age 72, unknown 89.1
1851 Male, age 51, unknown 85.4
1889 Female, age 72, unknown 84.9
2699 Male, age 18, unknown 84.4
1941 Male, age 53, unknown 79.3
2409 Female, age 72, unknown 78.6
2583 Male, age 75, right hemisphere 77.4
2665 Male, age 74, both hemispheres 75.7
2590 Female, age 75, unknown 75.1
Superior colliculus
nTPM: 77.8
1995 Male, age 72, unknown 82.1
2087 Female, age 72, unknown 80.7
2587 Male, age 74, left hemisphere 80.0
2668 Female, age 75, unknown 79.2
1796 Male, age 53, unknown 77.5
1839 Male, age 51, unknown 77.0
2664 Male, age 75, both hemispheres 76.4
1913 Female, age 42, unknown 75.5
2261 Male, age 18, unknown 75.4
1895 Male, age 76, right hemisphere 74.0
Ventral tegmental area
nTPM: 79.1
2410 Female, age 72, unknown 86.2
1915 Female, age 42, unknown 84.5
1942 Male, age 51, unknown 77.8
2218 Male, age 76, both hemispheres 77.3
2021 Male, age 53, unknown 75.9
2223 Female, age 72, unknown 73.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.9
Samples: 139

Max nTPM: 146.1
Min nTPM: 20.3
Std nTPM: 23.8
Median nTPM: 47.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 146.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 143.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 141.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 124.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 121.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 114.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 112.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 110.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 106.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 103.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 86.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 99.0
FF:10158-103A5 76 years, female 99.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.4
Pig sample Sample description nTPM
Midbrain
nTPM: 17.8
Samples: 4

Max nTPM: 26.6
Min nTPM: 13.3
Sample A Female 26.6
Sample B Female 17.7
Sample C Male 13.6
Sample D Male 13.3
Periaqueductal gray
nTPM: 20.5
Samples: 3

Max nTPM: 23.8
Min nTPM: 16.9
Sample B Female 16.9
Sample C Male 23.8
Sample D Male 20.9
Substantia nigra
nTPM: 22.4
Samples: 4

Max nTPM: 27.7
Min nTPM: 16.7
Sample A Female 27.7
Sample B Female 16.7
Sample C Male 21.6
Sample D Male 23.6
Superior colliculi
nTPM: 15.3
Samples: 4

Max nTPM: 20.3
Min nTPM: 9.8
Sample A Female 20.3
Sample B Female 9.8
Sample C Male 14.6
Sample D Male 16.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.5
Sample A Male 7.4
Sample B Male 6.5
Sample C Female 7.1
Sample D Female 7.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
74819671 Antisense, RP_060315_02_G10, Mouse strain C57BL/6J (56 days, male) 0.1
69014518 Antisense, RP_050310_01_C05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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