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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA:12.8 nTPM
GTEx:13.1 nTPM
FANTOM5:39.5 Scaled Tags Per Million
Pig:28.8 nTPM
Mouse:4.5 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.0
2666 Male, age 74, left hemisphere 12.8
1830 Male, age 51, unknown 12.3
2019 Male, age 18, unknown 12.1
2828 Female, age 72, unknown 11.6
2411 Female, age 72, unknown 11.0
1833 Male, age 53, unknown 10.9
1870 Female, age 42, unknown 10.7
1827 Male, age 72, unknown 10.1
2219 Male, age 76, both hemispheres 9.7
2586 Male, age 75, left hemisphere 8.4
Dorsal raphe nucleus
nTPM: 9.7
2750 Male, age 76, both hemispheres 11.4
2016 Female, age 72, unknown 11.0
1828 Male, age 53, unknown 10.0
2047 Male, age 72, unknown 8.5
2298 Female, age 72, unknown 7.9
Inferior colliculus
nTPM: 9.4
1890 Male, age 53, unknown 10.3
1848 Female, age 42, unknown 9.6
2849 Male, age 72, unknown 9.1
2097 Female, age 72, unknown 8.5
Median raphe nucleus
nTPM: 9.5
2220 Male, age 76, midline 9.5
Pedunculopontine tegmental nucleus
nTPM: 10.8
2338 Male, age 61, both hemispheres 12.6
2334 Male, age 80, both hemispheres 10.1
1921 Female, age 85, both hemispheres 9.8
Periaquaductal grey, anterior
nTPM: 9.1
2502 Female, age 75, unknown 9.5
1795 Male, age 51, unknown 9.4
1947 Male, age 18, unknown 8.3
Periaquaductal grey, dorsal
nTPM: 9.6
2464 Female, age 72, unknown 10.6
1831 Male, age 72, unknown 10.4
2850 Male, age 76, both hemispheres 9.1
1840 Male, age 53, unknown 8.5
Periaquaductal grey, lateral
nTPM: 9.0
2053 Male, age 18, unknown 9.4
2140 Male, age 76, both hemispheres 9.0
2272 Male, age 74, both hemispheres 8.4
Pretectal area
nTPM: 9.7
1815 Male, age 53, unknown 11.2
1944 Female, age 72, unknown 10.6
1816 Male, age 51, unknown 10.5
2667 Female, age 75, unknown 10.1
1817 Female, age 42, unknown 10.0
2007 Male, age 72, unknown 9.5
2316 Male, age 76, right hemisphere 9.2
2825 Male, age 18, unknown 9.1
2407 Male, age 75, both hemispheres 8.7
2224 Female, age 72, unknown 8.6
2273 Male, age 74, both hemispheres 8.6
Red nucleus
nTPM: 12.8
2823 Male, age 76, right hemisphere 14.9
2503 Female, age 72, unknown 14.0
2588 Male, age 74, left hemisphere 13.4
1865 Male, age 51, unknown 13.3
1954 Female, age 42, unknown 13.3
1904 Male, age 53, unknown 12.9
1821 Female, age 72, unknown 12.6
2227 Male, age 72, unknown 12.6
2785 Male, age 18, unknown 12.0
2769 Male, age 72, unknown 11.8
2584 Male, age 75, left hemisphere 11.2
2725 Female, age 75, unknown 11.2
Substantia nigra
nTPM: 10.9
2699 Male, age 18, unknown 12.2
1889 Female, age 72, unknown 11.6
2241 Male, age 72, unknown 11.5
1916 Female, age 42, unknown 11.4
2665 Male, age 74, both hemispheres 11.2
2409 Female, age 72, unknown 11.1
2590 Female, age 75, unknown 10.8
2583 Male, age 75, right hemisphere 10.0
1941 Male, age 53, unknown 9.9
1851 Male, age 51, unknown 9.7
Superior colliculus
nTPM: 10.3
1995 Male, age 72, unknown 12.6
1913 Female, age 42, unknown 12.3
2587 Male, age 74, left hemisphere 11.0
2668 Female, age 75, unknown 10.6
2087 Female, age 72, unknown 10.5
1796 Male, age 53, unknown 9.9
1895 Male, age 76, right hemisphere 9.7
1839 Male, age 51, unknown 9.6
2261 Male, age 18, unknown 9.5
2664 Male, age 75, both hemispheres 7.8
Ventral tegmental area
nTPM: 10.3
2410 Female, age 72, unknown 11.9
2223 Female, age 72, unknown 11.2
2218 Male, age 76, both hemispheres 10.2
1915 Female, age 42, unknown 9.9
2021 Male, age 53, unknown 9.7
1942 Male, age 51, unknown 9.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.1
Samples: 139

Max nTPM: 31.8
Min nTPM: 3.7
Std nTPM: 4.9
Median nTPM: 12.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 31.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 27.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 27.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 24.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 23.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 22.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 21.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 21.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 21.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 20.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 20.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.5
FF:10158-103A5 76 years, female 39.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.8
Pig sample Sample description nTPM
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 20.8
Min nTPM: 11.3
Sample A Female 20.8
Sample B Female 14.9
Sample C Male 11.6
Sample D Male 11.3
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 19.4
Min nTPM: 15.6
Sample B Female 17.1
Sample C Male 19.4
Sample D Male 15.6
Substantia nigra
nTPM: 23.1
Samples: 4

Max nTPM: 40.1
Min nTPM: 15.0
Sample A Female 16.0
Sample B Female 40.1
Sample C Male 15.0
Sample D Male 21.3
Superior colliculi
nTPM: 28.8
Samples: 4

Max nTPM: 62.4
Min nTPM: 11.9
Sample A Female 26.0
Sample B Female 62.4
Sample C Male 11.9
Sample D Male 14.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 4.8
Min nTPM: 4.3
Sample A Male 4.8
Sample B Male 4.3
Sample C Female 4.5
Sample D Female 4.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
74800883 Antisense, RP_060315_02_A02, Mouse strain C57BL/6J (56 days, male) 0.6
69549660 Antisense, RP_050317_04_C02, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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