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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.9 nTPM
HPA:27.9 nTPM
GTEx:12.3 nTPM
FANTOM5:80.9 Scaled Tags Per Million
Pig:36.5 nTPM
Mouse:34.1 nTPM
Allen mouse:3.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 27.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.2
2288 Male, age 75, left hemisphere 29.6
1854 Male, age 80, left hemisphere 18.5
2290 Female, age 72, unknown 18.5
2289 Male, age 61, right hemisphere 16.2
2846 Female, age 79, unknown 14.7
2481 Female, age 94, left hemisphere 12.4
1781 Male, age 74, unknown 10.0
1857 Female, age 85, left hemisphere 9.4
Claustrum
nTPM: 27.9
2568 Male, age 61, both hemispheres 46.1
2292 Female, age 85, both hemispheres 36.7
2198 Male, age 80, both hemispheres 31.0
1956 Male, age 74, unknown 27.7
2284 Female, age 91, both hemispheres 27.2
2392 Female, age 94, both hemispheres 26.2
2491 Male, age 75, both hemispheres 21.7
2645 Female, age 72, unknown 17.8
2196 Female, age 79, unknown 16.4
Globus pallidus, externus
nTPM: 23.1
1996 Male, age 80, right hemisphere 34.9
2646 Male, age 61, right hemisphere 23.6
2567 Female, age 72, unknown 21.8
2772 Female, age 79, unknown 18.1
2395 Male, age 75, both hemispheres 17.2
Globus pallidus, internus
nTPM: 24.2
2778 Female, age 91, both hemispheres 30.2
2111 Female, age 85, right hemisphere 28.0
2287 Male, age 75, right hemisphere 27.8
2037 Male, age 80, right hemisphere 26.6
1818 Male, age 74, unknown 24.4
2566 Female, age 72, unknown 17.1
2483 Female, age 94, right hemisphere 15.4
Nucleus accumbens
nTPM: 19.5
2391 Female, age 94, left hemisphere 32.0
2286 Male, age 75, left hemisphere 24.7
2824 Male, age 61, right hemisphere 18.9
2698 Female, age 72, unknown 18.4
2732 Male, age 80, right hemisphere 18.4
1806 Female, age 85, left hemisphere 17.0
1856 Female, age 91, right hemisphere 14.0
1783 Male, age 74, unknown 12.9
Nucleus basalis of Meynert
nTPM: 13.6
2569 Male, age 61, both hemispheres 18.1
2393 Male, age 80, right hemisphere 15.4
2821 Male, age 75, both hemispheres 12.7
2484 Female, age 94, left hemisphere 8.1
Nucleus of the diagonal band
nTPM: 4.6
1979 Male, age 74, unknown 13.2
2029 Male, age 61, right hemisphere 6.9
1812 Female, age 91, both hemispheres 1.9
2775 Male, age 80, right hemisphere 1.1
2195 Female, age 85, both hemispheres 0.0
Olfactory tubercle
nTPM: 8.7
2856 Male, age 75, right hemisphere 11.5
2487 Female, age 94, left hemisphere 9.6
1998 Female, age 91, both hemispheres 8.0
1846 Male, age 80, right hemisphere 5.7
Putamen
nTPM: 18.4
1829 Male, age 74, unknown 24.0
2482 Female, age 94, left hemisphere 19.9
2489 Female, age 72, unknown 19.9
2647 Male, age 75, left hemisphere 19.7
1937 Female, age 91, right hemisphere 15.7
1838 Male, age 80, right hemisphere 14.8
2466 Female, age 79, unknown 14.5
Septal nuclei
nTPM: 9.9
2394 Male, age 61, left hemisphere 21.0
2199 Male, age 80, right hemisphere 17.6
2629 Female, age 94, right hemisphere 11.2
2009 Female, age 91, both hemispheres 7.2
2031 Female, age 72, unknown 6.2
2059 Female, age 85, both hemispheres 5.9
1960 Male, age 74, unknown 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.5
Samples: 246

Max nTPM: 23.2
Min nTPM: 6.0
Std nTPM: 3.0
Median nTPM: 11.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 23.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 19.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 19.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 18.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 18.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 18.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 18.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 17.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 17.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 17.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 17.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.0
Samples: 246

Max nTPM: 23.8
Min nTPM: 3.4
Std nTPM: 2.8
Median nTPM: 9.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 23.8
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 17.2
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 16.5
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 16.4
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 16.3
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 16.3
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 15.9
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 15.6
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 15.5
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 15.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 15.3
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Brain - Putamen (basal ganglia)
Average nTPM: 12.3
Samples: 205

Max nTPM: 25.5
Min nTPM: 5.9
Std nTPM: 3.3
Median nTPM: 11.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 25.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 22.9
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 22.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 22.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 21.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 20.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 20.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 19.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 18.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 18.4
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 17.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.9
FF:10164-103B2 76 years, female 45.9
Globus pallidus
Scaled Tags Per Million: 80.9
FF:10175-103C4 60 years, female 109.7
FF:10161-103A8 76 years, female 52.2
Nucleus accumbens
Scaled Tags Per Million: 55.4
FF:10037-101F1 23-56 years, mixed 55.4
Putamen
Scaled Tags Per Million: 38.1
FF:10176-103C5 60 years, female 38.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 36.5
Pig sample Sample description nTPM
Caudate
nTPM: 24.0
Samples: 4

Max nTPM: 24.8
Min nTPM: 22.7
Sample A Female 24.5
Sample B Female 24.8
Sample C Male 22.7
Sample D Male 24.0
Putamen
nTPM: 36.4
Samples: 4

Max nTPM: 52.1
Min nTPM: 27.2
Sample A Female 52.1
Sample B Female 27.2
Sample C Male 30.7
Sample D Male 35.6
Septum
nTPM: 31.5
Samples: 4

Max nTPM: 35.8
Min nTPM: 24.5
Sample A Female 31.2
Sample B Female 24.5
Sample C Male 35.8
Sample D Male 34.3
Ventral pallidum
nTPM: 36.6
Samples: 4

Max nTPM: 53.4
Min nTPM: 25.7
Sample A Female 27.9
Sample B Female 25.7
Sample C Male 53.4
Sample D Male 39.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 34.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.7
Samples: 4

Max nTPM: 20.3
Min nTPM: 18.9
Sample A Male 20.1
Sample B Male 20.3
Sample C Female 19.5
Sample D Female 18.9
Septum
nTPM: 34.1
Samples: 4

Max nTPM: 36.9
Min nTPM: 32.4
Sample A Male 32.5
Sample B Male 34.7
Sample C Female 32.4
Sample D Female 36.9
Ventral forebrain
nTPM: 24.4
Samples: 4

Max nTPM: 30.0
Min nTPM: 21.7
Sample A Male 21.7
Sample B Male 30.0
Sample C Female 21.9
Sample D Female 23.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.2
70565228 Antisense, RP_050623_04_E07, Mouse strain C57BL/6J (56 days, male) 2.5
74750032 Antisense, RP_060220_05_F01, Mouse strain C57BL/6J (56 days, male) 2.0
Pallidum
Expression energy: 3.7
70565228 Antisense, RP_050623_04_E07, Mouse strain C57BL/6J (56 days, male) 3.9
74750032 Antisense, RP_060220_05_F01, Mouse strain C57BL/6J (56 days, male) 3.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.