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LRPPRC
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.4 nTPM
HPA:30.4 nTPM
GTEx:24.4 nTPM
FANTOM5:94.2 Scaled Tags Per Million
Pig:37.7 nTPM
Mouse:42.2 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.8
2019 Male, age 18, unknown 31.8
2411 Female, age 72, unknown 31.5
1827 Male, age 72, unknown 28.9
2219 Male, age 76, both hemispheres 28.8
1870 Female, age 42, unknown 25.9
2586 Male, age 75, left hemisphere 24.6
2828 Female, age 72, unknown 24.6
1833 Male, age 53, unknown 24.5
1830 Male, age 51, unknown 24.1
2666 Male, age 74, left hemisphere 23.7
Dorsal raphe nucleus
nTPM: 27.1
2298 Female, age 72, unknown 29.9
1828 Male, age 53, unknown 27.8
2047 Male, age 72, unknown 27.7
2750 Male, age 76, both hemispheres 27.2
2016 Female, age 72, unknown 23.0
Inferior colliculus
nTPM: 26.4
2097 Female, age 72, unknown 30.2
1890 Male, age 53, unknown 26.7
1848 Female, age 42, unknown 26.4
2849 Male, age 72, unknown 22.1
Median raphe nucleus
nTPM: 27.2
2220 Male, age 76, midline 27.2
Pedunculopontine tegmental nucleus
nTPM: 26.4
1921 Female, age 85, both hemispheres 30.0
2334 Male, age 80, both hemispheres 27.9
2338 Male, age 61, both hemispheres 21.4
Periaquaductal grey, anterior
nTPM: 27.5
2502 Female, age 75, unknown 29.8
1947 Male, age 18, unknown 27.0
1795 Male, age 51, unknown 25.7
Periaquaductal grey, dorsal
nTPM: 24.8
2464 Female, age 72, unknown 26.5
1840 Male, age 53, unknown 26.1
1831 Male, age 72, unknown 24.2
2850 Male, age 76, both hemispheres 22.3
Periaquaductal grey, lateral
nTPM: 23.3
2053 Male, age 18, unknown 24.6
2272 Male, age 74, both hemispheres 24.6
2140 Male, age 76, both hemispheres 20.5
Pretectal area
nTPM: 29.9
1816 Male, age 51, unknown 39.1
1944 Female, age 72, unknown 35.9
2007 Male, age 72, unknown 35.2
1817 Female, age 42, unknown 34.7
1815 Male, age 53, unknown 31.9
2667 Female, age 75, unknown 29.5
2224 Female, age 72, unknown 27.6
2273 Male, age 74, both hemispheres 26.8
2316 Male, age 76, right hemisphere 23.9
2407 Male, age 75, both hemispheres 22.5
2825 Male, age 18, unknown 22.3
Red nucleus
nTPM: 26.0
2785 Male, age 18, unknown 29.3
1821 Female, age 72, unknown 29.2
2503 Female, age 72, unknown 28.1
2725 Female, age 75, unknown 27.0
2588 Male, age 74, left hemisphere 26.9
2823 Male, age 76, right hemisphere 25.6
1865 Male, age 51, unknown 25.3
2227 Male, age 72, unknown 24.9
1954 Female, age 42, unknown 24.3
2769 Male, age 72, unknown 23.9
2584 Male, age 75, left hemisphere 23.7
1904 Male, age 53, unknown 23.2
Substantia nigra
nTPM: 30.4
1941 Male, age 53, unknown 35.2
1916 Female, age 42, unknown 35.0
2241 Male, age 72, unknown 34.0
1889 Female, age 72, unknown 33.9
1851 Male, age 51, unknown 32.4
2409 Female, age 72, unknown 30.8
2590 Female, age 75, unknown 27.1
2665 Male, age 74, both hemispheres 25.4
2583 Male, age 75, right hemisphere 25.2
2699 Male, age 18, unknown 24.7
Superior colliculus
nTPM: 27.2
2087 Female, age 72, unknown 33.2
2261 Male, age 18, unknown 30.8
1796 Male, age 53, unknown 28.3
2587 Male, age 74, left hemisphere 28.2
1895 Male, age 76, right hemisphere 27.1
1913 Female, age 42, unknown 26.5
2668 Female, age 75, unknown 26.4
1839 Male, age 51, unknown 24.6
1995 Male, age 72, unknown 24.5
2664 Male, age 75, both hemispheres 22.1
Ventral tegmental area
nTPM: 27.6
2410 Female, age 72, unknown 34.3
2218 Male, age 76, both hemispheres 30.2
1915 Female, age 42, unknown 28.9
1942 Male, age 51, unknown 25.3
2223 Female, age 72, unknown 24.6
2021 Male, age 53, unknown 22.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.4
Samples: 139

Max nTPM: 51.7
Min nTPM: 12.3
Std nTPM: 7.4
Median nTPM: 22.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 51.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 48.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 47.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 42.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 42.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 40.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 38.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 38.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 37.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 36.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 34.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.2
FF:10158-103A5 76 years, female 94.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.7
Pig sample Sample description nTPM
Midbrain
nTPM: 35.3
Samples: 4

Max nTPM: 49.8
Min nTPM: 24.7
Sample A Female 24.7
Sample B Female 30.2
Sample C Male 49.8
Sample D Male 36.6
Periaqueductal gray
nTPM: 25.9
Samples: 3

Max nTPM: 28.5
Min nTPM: 22.9
Sample B Female 26.4
Sample C Male 28.5
Sample D Male 22.9
Substantia nigra
nTPM: 29.4
Samples: 4

Max nTPM: 39.1
Min nTPM: 20.9
Sample A Female 39.1
Sample B Female 25.0
Sample C Male 32.4
Sample D Male 20.9
Superior colliculi
nTPM: 37.7
Samples: 4

Max nTPM: 52.6
Min nTPM: 26.7
Sample A Female 36.6
Sample B Female 26.7
Sample C Male 52.6
Sample D Male 34.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.2
Samples: 4

Max nTPM: 45.8
Min nTPM: 36.8
Sample A Male 36.8
Sample B Male 42.0
Sample C Female 45.8
Sample D Female 44.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
70546087 Antisense, RP_050623_03_E12, Mouse strain C57BL/6J (56 days, male) 6.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.