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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.5 nTPM
HPA:20.5 nTPM
GTEx:18.8 nTPM
FANTOM5:34.6 Scaled Tags Per Million
Pig:8.9 nTPM
Mouse:41.7 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.0
1781 Male, age 74, unknown 22.5
1857 Female, age 85, left hemisphere 15.0
1854 Male, age 80, left hemisphere 14.9
2846 Female, age 79, unknown 14.2
2289 Male, age 61, right hemisphere 13.8
2290 Female, age 72, unknown 13.2
2288 Male, age 75, left hemisphere 13.0
2481 Female, age 94, left hemisphere 5.0
Claustrum
nTPM: 17.9
2568 Male, age 61, both hemispheres 26.2
2645 Female, age 72, unknown 23.2
2196 Female, age 79, unknown 20.4
2284 Female, age 91, both hemispheres 20.2
2491 Male, age 75, both hemispheres 17.7
2392 Female, age 94, both hemispheres 13.8
2198 Male, age 80, both hemispheres 13.7
1956 Male, age 74, unknown 13.2
2292 Female, age 85, both hemispheres 12.8
Globus pallidus, externus
nTPM: 7.5
2646 Male, age 61, right hemisphere 11.4
2567 Female, age 72, unknown 10.1
2395 Male, age 75, both hemispheres 5.9
2772 Female, age 79, unknown 5.5
1996 Male, age 80, right hemisphere 4.7
Globus pallidus, internus
nTPM: 6.5
2566 Female, age 72, unknown 10.9
2111 Female, age 85, right hemisphere 7.5
2037 Male, age 80, right hemisphere 6.8
1818 Male, age 74, unknown 6.5
2778 Female, age 91, both hemispheres 5.4
2287 Male, age 75, right hemisphere 5.3
2483 Female, age 94, right hemisphere 3.3
Nucleus accumbens
nTPM: 15.8
1856 Female, age 91, right hemisphere 27.0
1783 Male, age 74, unknown 21.7
2824 Male, age 61, right hemisphere 18.4
2286 Male, age 75, left hemisphere 15.8
2698 Female, age 72, unknown 15.3
1806 Female, age 85, left hemisphere 13.8
2732 Male, age 80, right hemisphere 11.4
2391 Female, age 94, left hemisphere 3.3
Nucleus basalis of Meynert
nTPM: 12.1
2393 Male, age 80, right hemisphere 13.9
2821 Male, age 75, both hemispheres 12.9
2569 Male, age 61, both hemispheres 11.3
2484 Female, age 94, left hemisphere 10.3
Nucleus of the diagonal band
nTPM: 20.5
2029 Male, age 61, right hemisphere 31.5
1979 Male, age 74, unknown 18.0
2195 Female, age 85, both hemispheres 18.0
1812 Female, age 91, both hemispheres 17.9
2775 Male, age 80, right hemisphere 17.0
Olfactory tubercle
nTPM: 19.8
2487 Female, age 94, left hemisphere 24.0
1998 Female, age 91, both hemispheres 22.6
1846 Male, age 80, right hemisphere 16.3
2856 Male, age 75, right hemisphere 16.3
Putamen
nTPM: 12.7
1937 Female, age 91, right hemisphere 18.3
1838 Male, age 80, right hemisphere 15.5
2466 Female, age 79, unknown 14.6
2647 Male, age 75, left hemisphere 13.9
2489 Female, age 72, unknown 12.8
1829 Male, age 74, unknown 9.1
2482 Female, age 94, left hemisphere 5.1
Septal nuclei
nTPM: 18.3
2629 Female, age 94, right hemisphere 23.4
2031 Female, age 72, unknown 23.3
2009 Female, age 91, both hemispheres 20.5
1960 Male, age 74, unknown 19.5
2394 Male, age 61, left hemisphere 16.5
2059 Female, age 85, both hemispheres 14.8
2199 Male, age 80, right hemisphere 9.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.6
Samples: 246

Max nTPM: 27.2
Min nTPM: 4.6
Std nTPM: 3.3
Median nTPM: 12.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 27.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 23.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 21.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 21.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 19.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 19.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 19.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 18.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 18.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 18.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 18.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.8
Samples: 246

Max nTPM: 38.7
Min nTPM: 3.8
Std nTPM: 5.5
Median nTPM: 19.2
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 38.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 32.2
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 31.3
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 30.3
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 30.0
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 28.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 28.4
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 28.1
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 28.1
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 27.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 27.7
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Brain - Putamen (basal ganglia)
Average nTPM: 12.7
Samples: 205

Max nTPM: 24.3
Min nTPM: 4.4
Std nTPM: 3.6
Median nTPM: 12.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 24.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 21.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 21.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 21.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 20.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 20.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 19.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 19.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 19.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 19.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 19.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 33.1
FF:10164-103B2 76 years, female 33.1
Globus pallidus
Scaled Tags Per Million: 8.6
FF:10161-103A8 76 years, female 9.3
FF:10175-103C4 60 years, female 7.8
Nucleus accumbens
Scaled Tags Per Million: 28.2
FF:10037-101F1 23-56 years, mixed 28.2
Putamen
Scaled Tags Per Million: 34.6
FF:10176-103C5 60 years, female 34.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.9
Pig sample Sample description nTPM
Caudate
nTPM: 7.2
Samples: 4

Max nTPM: 8.5
Min nTPM: 6.2
Sample A Female 6.9
Sample B Female 8.5
Sample C Male 7.1
Sample D Male 6.2
Putamen
nTPM: 8.9
Samples: 4

Max nTPM: 12.3
Min nTPM: 5.2
Sample A Female 12.3
Sample B Female 5.2
Sample C Male 7.8
Sample D Male 10.1
Septum
nTPM: 8.6
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.1
Sample A Female 10.3
Sample B Female 7.1
Sample C Male 9.5
Sample D Male 7.4
Ventral pallidum
nTPM: 8.4
Samples: 4

Max nTPM: 11.3
Min nTPM: 6.0
Sample A Female 6.0
Sample B Female 7.1
Sample C Male 11.3
Sample D Male 9.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 41.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 41.8
Samples: 4

Max nTPM: 46.9
Min nTPM: 35.1
Sample A Male 42.5
Sample B Male 46.9
Sample C Female 35.1
Sample D Female 42.5
Septum
nTPM: 29.8
Samples: 4

Max nTPM: 34.4
Min nTPM: 25.4
Sample A Male 32.4
Sample B Male 34.4
Sample C Female 25.4
Sample D Female 27.0
Ventral forebrain
nTPM: 33.9
Samples: 4

Max nTPM: 35.7
Min nTPM: 31.4
Sample A Male 33.0
Sample B Male 31.4
Sample C Female 35.7
Sample D Female 35.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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