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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:54.3 nTPM
HPA:54.3 nTPM
GTEx:42.6 nTPM
FANTOM5:95.7 Scaled Tags Per Million
Pig:36.7 nTPM
Mouse:63.0 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA005457
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 50.8
1781 Male, age 74, unknown 53.3
2288 Male, age 75, left hemisphere 53.1
2846 Female, age 79, unknown 52.7
1854 Male, age 80, left hemisphere 50.8
1857 Female, age 85, left hemisphere 50.0
2481 Female, age 94, left hemisphere 49.5
2290 Female, age 72, unknown 49.4
2289 Male, age 61, right hemisphere 47.8
Claustrum
nTPM: 54.3
1956 Male, age 74, unknown 57.5
2292 Female, age 85, both hemispheres 56.6
2392 Female, age 94, both hemispheres 55.9
2568 Male, age 61, both hemispheres 55.4
2196 Female, age 79, unknown 54.7
2198 Male, age 80, both hemispheres 54.0
2284 Female, age 91, both hemispheres 52.5
2645 Female, age 72, unknown 51.1
2491 Male, age 75, both hemispheres 51.0
Globus pallidus, externus
nTPM: 48.8
2395 Male, age 75, both hemispheres 53.4
1996 Male, age 80, right hemisphere 49.5
2772 Female, age 79, unknown 49.5
2567 Female, age 72, unknown 48.2
2646 Male, age 61, right hemisphere 43.6
Globus pallidus, internus
nTPM: 52.3
2287 Male, age 75, right hemisphere 56.9
2778 Female, age 91, both hemispheres 55.8
1818 Male, age 74, unknown 53.1
2037 Male, age 80, right hemisphere 51.5
2111 Female, age 85, right hemisphere 51.5
2566 Female, age 72, unknown 50.2
2483 Female, age 94, right hemisphere 47.1
Nucleus accumbens
nTPM: 51.7
2698 Female, age 72, unknown 57.7
2391 Female, age 94, left hemisphere 56.1
1806 Female, age 85, left hemisphere 53.4
2286 Male, age 75, left hemisphere 51.7
1783 Male, age 74, unknown 50.5
1856 Female, age 91, right hemisphere 50.1
2824 Male, age 61, right hemisphere 48.7
2732 Male, age 80, right hemisphere 45.6
Nucleus basalis of Meynert
nTPM: 50.3
2821 Male, age 75, both hemispheres 58.9
2393 Male, age 80, right hemisphere 51.0
2484 Female, age 94, left hemisphere 46.9
2569 Male, age 61, both hemispheres 44.5
Nucleus of the diagonal band
nTPM: 53.0
2195 Female, age 85, both hemispheres 57.1
2775 Male, age 80, right hemisphere 53.3
1812 Female, age 91, both hemispheres 52.9
1979 Male, age 74, unknown 50.8
2029 Male, age 61, right hemisphere 50.7
Olfactory tubercle
nTPM: 53.5
1846 Male, age 80, right hemisphere 55.8
2856 Male, age 75, right hemisphere 54.4
2487 Female, age 94, left hemisphere 52.2
1998 Female, age 91, both hemispheres 51.5
Putamen
nTPM: 50.2
1838 Male, age 80, right hemisphere 55.4
2482 Female, age 94, left hemisphere 54.4
1829 Male, age 74, unknown 51.9
2647 Male, age 75, left hemisphere 48.9
2466 Female, age 79, unknown 48.8
2489 Female, age 72, unknown 46.3
1937 Female, age 91, right hemisphere 46.0
Septal nuclei
nTPM: 52.8
2629 Female, age 94, right hemisphere 62.2
1960 Male, age 74, unknown 54.8
2031 Female, age 72, unknown 54.3
2009 Female, age 91, both hemispheres 52.6
2059 Female, age 85, both hemispheres 51.0
2199 Male, age 80, right hemisphere 49.3
2394 Male, age 61, left hemisphere 45.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.1
Samples: 246

Max nTPM: 58.3
Min nTPM: 32.8
Std nTPM: 4.3
Median nTPM: 41.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 58.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 57.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 55.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 55.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 54.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 54.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 52.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 51.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 51.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 50.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 49.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.7
Samples: 246

Max nTPM: 67.8
Min nTPM: 28.7
Std nTPM: 5.8
Median nTPM: 40.0
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 67.8
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 65.1
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 61.5
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 57.8
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 56.6
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 54.6
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 54.3
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 54.3
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 53.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 52.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 51.8
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Brain - Putamen (basal ganglia)
Average nTPM: 42.6
Samples: 205

Max nTPM: 72.2
Min nTPM: 31.4
Std nTPM: 5.0
Median nTPM: 41.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 72.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 58.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 55.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 53.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 53.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 53.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 50.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 50.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 50.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 50.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 50.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 75.1
FF:10164-103B2 76 years, female 75.1
Globus pallidus
Scaled Tags Per Million: 92.6
FF:10175-103C4 60 years, female 99.4
FF:10161-103A8 76 years, female 85.8
Nucleus accumbens
Scaled Tags Per Million: 89.0
FF:10037-101F1 23-56 years, mixed 89.0
Putamen
Scaled Tags Per Million: 95.7
FF:10176-103C5 60 years, female 95.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 36.7
Pig sample Sample description nTPM
Caudate
nTPM: 32.5
Samples: 4

Max nTPM: 33.6
Min nTPM: 31.1
Sample A Female 31.1
Sample B Female 32.9
Sample C Male 33.6
Sample D Male 32.2
Putamen
nTPM: 36.7
Samples: 4

Max nTPM: 39.9
Min nTPM: 31.2
Sample A Female 38.9
Sample B Female 31.2
Sample C Male 36.9
Sample D Male 39.9
Septum
nTPM: 36.1
Samples: 4

Max nTPM: 42.3
Min nTPM: 32.2
Sample A Female 36.2
Sample B Female 32.2
Sample C Male 42.3
Sample D Male 33.8
Ventral pallidum
nTPM: 35.6
Samples: 4

Max nTPM: 39.5
Min nTPM: 32.6
Sample A Female 32.6
Sample B Female 33.5
Sample C Male 39.5
Sample D Male 36.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 63.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 63.0
Samples: 4

Max nTPM: 66.3
Min nTPM: 58.4
Sample A Male 65.2
Sample B Male 66.3
Sample C Female 58.4
Sample D Female 62.0
Septum
nTPM: 50.6
Samples: 4

Max nTPM: 53.2
Min nTPM: 49.0
Sample A Male 53.2
Sample B Male 49.6
Sample C Female 50.4
Sample D Female 49.0
Ventral forebrain
nTPM: 61.3
Samples: 4

Max nTPM: 65.3
Min nTPM: 55.5
Sample A Male 60.7
Sample B Male 55.5
Sample C Female 63.7
Sample D Female 65.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
76003605 Antisense, RP_060608_02_G12, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
76003605 Antisense, RP_060608_02_G12, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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