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PAPSS1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:41.9 nTPM
HPA:41.9 nTPM
GTEx:49.5 nTPM
FANTOM5:94.0 Scaled Tags Per Million
Pig:24.3 nTPM
Mouse:66.6 nTPM
Allen mouse:2.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA049781
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 41.9
Sample id Sample description nTPM
Hippocampus
nTPM: 38.6
1898 Male, age 80, left hemisphere 45.6
1855 Male, age 76, left hemisphere 40.0
1911 Female, age 85, right hemisphere 39.4
2621 Female, age 67, right hemisphere 37.5
2529 Female, age 94, left hemisphere 35.7
2148 Female, age 91, left hemisphere 33.2
Dentate gyrus
nTPM: 37.5
2010 Male, age 76, both hemispheres 43.6
2530 Female, age 94, left hemisphere 39.3
1927 Female, age 91, both hemispheres 37.8
2246 Female, age 85, both hemispheres 36.1
2528 Male, age 74, both hemispheres 35.7
2531 Female, age 67, both hemispheres 32.4
Entorhinal gyrus
nTPM: 36.8
1938 Female, age 85, left hemisphere 40.7
2764 Male, age 80, right hemisphere 38.5
2613 Female, age 94, left hemisphere 37.4
1787 Male, age 76, left hemisphere 37.0
2117 Female, age 91, right hemisphere 35.7
2686 Male, age 75, right hemisphere 31.7
Hippocampus, CA1
nTPM: 41.9
2749 Male, age 80, left hemisphere 59.4
1873 Female, age 85, both hemispheres 42.9
2527 Male, age 74, both hemispheres 38.9
2045 Male, age 76, both hemispheres 34.2
2082 Female, age 91, right hemisphere 33.8
Hippocampus, CA2
nTPM: 39.9
1892 Male, age 76, both hemispheres 47.2
1963 Male, age 80, left hemisphere 46.5
2249 Male, age 74, both hemispheres 41.6
2437 Female, age 94, left hemisphere 35.0
1940 Female, age 85, left hemisphere 34.8
2113 Female, age 91, right hemisphere 34.6
Hippocampus, CA3
nTPM: 38.8
2137 Male, age 80, left hemisphere 51.9
1867 Male, age 76, both hemispheres 43.6
1891 Female, age 85, both hemispheres 39.5
2436 Male, age 74, both hemispheres 35.5
2620 Female, age 94, left hemisphere 32.9
2861 Female, age 67, both hemispheres 29.3
Parahippocampal cortex
nTPM: 35.3
1850 Male, age 80, both hemispheres 42.6
1933 Female, age 85, both hemispheres 39.0
1990 Female, age 91, right hemisphere 36.7
2018 Male, age 76, both hemispheres 36.6
2532 Female, age 72, left hemisphere 35.5
2245 Female, age 91, both hemispheres 34.8
2250 Female, age 67, right hemisphere 34.2
2693 Female, age 94, both hemispheres 33.7
2692 Male, age 74, both hemispheres 32.1
2622 Female, age 67, right hemisphere 28.4
Perirhinal gyrus
nTPM: 38.3
1847 Female, age 91, left hemisphere 40.7
1841 Female, age 85, right hemisphere 39.8
1794 Male, age 80, right hemisphere 39.1
2848 Male, age 76, right hemisphere 36.4
2521 Female, age 94, right hemisphere 35.8
Subiculum
nTPM: 37.9
1901 Male, age 80, both hemispheres 44.3
2042 Male, age 76, both hemispheres 43.0
1977 Female, age 85, both hemispheres 39.9
2438 Female, age 94, left hemisphere 35.1
2619 Male, age 74, both hemispheres 33.0
2729 Female, age 91, right hemisphere 32.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 49.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 49.5
Samples: 197

Max nTPM: 105.3
Min nTPM: 15.6
Std nTPM: 13.4
Median nTPM: 48.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 105.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 91.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 78.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 77.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 77.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 74.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 74.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 74.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 73.7
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 73.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 72.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 94.0
FF:10169-103B7 60 years, female 107.7
FF:10153-102I9 76 years, female 80.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 24.3
Samples: 4

Max nTPM: 26.5
Min nTPM: 21.9
Sample A Female 26.5
Sample B Female 25.3
Sample C Male 21.9
Sample D Male 23.4
Entorhinal cortex
nTPM: 15.1
Samples: 4

Max nTPM: 17.7
Min nTPM: 13.1
Sample A Female 14.2
Sample B Female 17.7
Sample C Male 15.4
Sample D Male 13.1
Subiculum
nTPM: 15.7
Samples: 4

Max nTPM: 18.9
Min nTPM: 13.9
Sample A Female 18.9
Sample B Female 15.4
Sample C Male 14.4
Sample D Male 13.9
Ventral hippocampus
nTPM: 18.6
Samples: 4

Max nTPM: 27.9
Min nTPM: 13.9
Sample A Female 15.5
Sample B Female 13.9
Sample C Male 17.1
Sample D Male 27.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 66.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 58.8
Samples: 4

Max nTPM: 61.8
Min nTPM: 54.8
Sample A Male 59.1
Sample B Male 54.8
Sample C Female 61.8
Sample D Female 59.4
Hippocampal formation
nTPM: 66.6
Samples: 4

Max nTPM: 77.1
Min nTPM: 62.2
Sample A Male 62.9
Sample B Male 62.2
Sample C Female 77.1
Sample D Female 64.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.3
71280658 Antisense, RP_050818_01_C09, Mouse strain C57BL/6J (56 days, male) 2.3

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