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SMARCC2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:52.1 nTPM
HPA:52.1 nTPM
GTEx:40.4 nTPM
FANTOM5:77.3 Scaled Tags Per Million
Pig:85.7 nTPM
Mouse:77.9 nTPM
Allen mouse:7.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA021213Antibody CAB004321
Glial cells HighMedium
Neuronal cells HighHigh




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 49.6
2846 Female, age 79, unknown 57.2
2288 Male, age 75, left hemisphere 51.8
2290 Female, age 72, unknown 51.6
1781 Male, age 74, unknown 51.1
1854 Male, age 80, left hemisphere 49.1
2289 Male, age 61, right hemisphere 48.1
1857 Female, age 85, left hemisphere 46.0
2481 Female, age 94, left hemisphere 42.1
Claustrum
nTPM: 43.7
2568 Male, age 61, both hemispheres 49.6
2196 Female, age 79, unknown 45.6
2491 Male, age 75, both hemispheres 44.8
2645 Female, age 72, unknown 44.8
1956 Male, age 74, unknown 43.7
2198 Male, age 80, both hemispheres 43.4
2284 Female, age 91, both hemispheres 43.1
2292 Female, age 85, both hemispheres 39.8
2392 Female, age 94, both hemispheres 38.9
Globus pallidus, externus
nTPM: 44.6
2646 Male, age 61, right hemisphere 51.2
2567 Female, age 72, unknown 48.4
1996 Male, age 80, right hemisphere 43.9
2772 Female, age 79, unknown 40.3
2395 Male, age 75, both hemispheres 39.2
Globus pallidus, internus
nTPM: 45.4
2483 Female, age 94, right hemisphere 55.1
2287 Male, age 75, right hemisphere 52.1
2566 Female, age 72, unknown 45.5
1818 Male, age 74, unknown 44.9
2778 Female, age 91, both hemispheres 40.9
2037 Male, age 80, right hemisphere 40.2
2111 Female, age 85, right hemisphere 38.9
Nucleus accumbens
nTPM: 45.4
1783 Male, age 74, unknown 52.7
2698 Female, age 72, unknown 52.6
1856 Female, age 91, right hemisphere 49.7
2286 Male, age 75, left hemisphere 45.9
2824 Male, age 61, right hemisphere 44.9
1806 Female, age 85, left hemisphere 42.7
2391 Female, age 94, left hemisphere 40.7
2732 Male, age 80, right hemisphere 33.9
Nucleus basalis of Meynert
nTPM: 49.6
2569 Male, age 61, both hemispheres 57.5
2821 Male, age 75, both hemispheres 48.5
2393 Male, age 80, right hemisphere 47.9
2484 Female, age 94, left hemisphere 44.5
Nucleus of the diagonal band
nTPM: 48.4
2195 Female, age 85, both hemispheres 52.5
2775 Male, age 80, right hemisphere 51.9
1812 Female, age 91, both hemispheres 49.5
2029 Male, age 61, right hemisphere 47.8
1979 Male, age 74, unknown 40.2
Olfactory tubercle
nTPM: 46.3
1846 Male, age 80, right hemisphere 50.3
2856 Male, age 75, right hemisphere 48.4
1998 Female, age 91, both hemispheres 45.1
2487 Female, age 94, left hemisphere 41.4
Putamen
nTPM: 52.1
2647 Male, age 75, left hemisphere 59.4
1838 Male, age 80, right hemisphere 58.1
1829 Male, age 74, unknown 55.8
2489 Female, age 72, unknown 53.3
2466 Female, age 79, unknown 47.0
2482 Female, age 94, left hemisphere 46.4
1937 Female, age 91, right hemisphere 45.1
Septal nuclei
nTPM: 44.0
2629 Female, age 94, right hemisphere 51.2
1960 Male, age 74, unknown 48.2
2031 Female, age 72, unknown 45.2
2009 Female, age 91, both hemispheres 44.0
2059 Female, age 85, both hemispheres 42.8
2199 Male, age 80, right hemisphere 41.2
2394 Male, age 61, left hemisphere 35.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.4
Samples: 246

Max nTPM: 60.1
Min nTPM: 14.2
Std nTPM: 7.7
Median nTPM: 40.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 60.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 59.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 57.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 55.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 55.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 54.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 54.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 54.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 53.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 53.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 52.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 38.2
Samples: 246

Max nTPM: 65.8
Min nTPM: 11.3
Std nTPM: 9.5
Median nTPM: 38.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 65.8
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 61.7
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 60.4
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 57.0
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 55.5
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 54.9
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 54.8
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 54.7
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 54.7
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 54.5
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 54.2
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Brain - Putamen (basal ganglia)
Average nTPM: 38.6
Samples: 205

Max nTPM: 60.3
Min nTPM: 14.2
Std nTPM: 8.1
Median nTPM: 38.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 60.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 56.1
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 55.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 54.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 54.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 53.2
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 52.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 52.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 52.3
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 51.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 51.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.2
FF:10164-103B2 76 years, female 71.2
Globus pallidus
Scaled Tags Per Million: 57.8
FF:10161-103A8 76 years, female 80.2
FF:10175-103C4 60 years, female 35.5
Nucleus accumbens
Scaled Tags Per Million: 77.3
FF:10037-101F1 23-56 years, mixed 77.3
Putamen
Scaled Tags Per Million: 67.3
FF:10176-103C5 60 years, female 67.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 85.7
Pig sample Sample description nTPM
Caudate
nTPM: 82.7
Samples: 4

Max nTPM: 100.6
Min nTPM: 69.8
Sample A Female 69.8
Sample B Female 85.9
Sample C Male 100.6
Sample D Male 74.5
Putamen
nTPM: 85.7
Samples: 4

Max nTPM: 96.2
Min nTPM: 77.5
Sample A Female 78.1
Sample B Female 77.5
Sample C Male 96.2
Sample D Male 90.8
Septum
nTPM: 79.7
Samples: 4

Max nTPM: 86.6
Min nTPM: 68.9
Sample A Female 83.4
Sample B Female 79.9
Sample C Male 86.6
Sample D Male 68.9
Ventral pallidum
nTPM: 83.1
Samples: 4

Max nTPM: 94.5
Min nTPM: 73.8
Sample A Female 73.8
Sample B Female 85.9
Sample C Male 94.5
Sample D Male 78.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 77.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 74.0
Samples: 4

Max nTPM: 75.8
Min nTPM: 72.7
Sample A Male 72.7
Sample B Male 74.3
Sample C Female 75.8
Sample D Female 73.3
Septum
nTPM: 76.4
Samples: 4

Max nTPM: 85.3
Min nTPM: 70.1
Sample A Male 85.3
Sample B Male 70.3
Sample C Female 70.1
Sample D Female 79.8
Ventral forebrain
nTPM: 77.9
Samples: 4

Max nTPM: 81.2
Min nTPM: 71.5
Sample A Male 81.0
Sample B Male 77.7
Sample C Female 71.5
Sample D Female 81.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.6
69444723 Antisense, RP_050414_04_D12, Mouse strain C57BL/6J (56 days, male) 7.6
Pallidum
Expression energy: 7.6
69444723 Antisense, RP_050414_04_D12, Mouse strain C57BL/6J (56 days, male) 7.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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