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CBLN3
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:3.0 nTPM
HPA:3.0 nTPM
GTEx:2.7 nTPM
FANTOM5:0.1 Scaled Tags Per Million
Pig:0.6 nTPM
Mouse:0.3 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041266
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.5
1781 Male, age 74, unknown 6.0
2289 Male, age 61, right hemisphere 2.5
1854 Male, age 80, left hemisphere 2.4
2481 Female, age 94, left hemisphere 2.2
2846 Female, age 79, unknown 1.9
1857 Female, age 85, left hemisphere 1.8
2288 Male, age 75, left hemisphere 1.8
2290 Female, age 72, unknown 1.6
Claustrum
nTPM: 3.0
2645 Female, age 72, unknown 4.3
2196 Female, age 79, unknown 3.5
2284 Female, age 91, both hemispheres 3.4
2568 Male, age 61, both hemispheres 2.9
2491 Male, age 75, both hemispheres 2.8
1956 Male, age 74, unknown 2.6
2392 Female, age 94, both hemispheres 2.5
2198 Male, age 80, both hemispheres 2.4
2292 Female, age 85, both hemispheres 2.2
Globus pallidus, externus
nTPM: 2.9
2646 Male, age 61, right hemisphere 3.5
2567 Female, age 72, unknown 3.2
1996 Male, age 80, right hemisphere 2.8
2772 Female, age 79, unknown 2.7
2395 Male, age 75, both hemispheres 2.2
Globus pallidus, internus
nTPM: 2.5
2037 Male, age 80, right hemisphere 3.2
2566 Female, age 72, unknown 3.0
2483 Female, age 94, right hemisphere 2.7
2111 Female, age 85, right hemisphere 2.5
2778 Female, age 91, both hemispheres 2.5
2287 Male, age 75, right hemisphere 2.1
1818 Male, age 74, unknown 1.5
Nucleus accumbens
nTPM: 2.5
1783 Male, age 74, unknown 4.2
2732 Male, age 80, right hemisphere 3.0
2824 Male, age 61, right hemisphere 2.5
2391 Female, age 94, left hemisphere 2.4
2698 Female, age 72, unknown 2.1
1806 Female, age 85, left hemisphere 2.0
1856 Female, age 91, right hemisphere 1.9
2286 Male, age 75, left hemisphere 1.8
Nucleus basalis of Meynert
nTPM: 2.7
2569 Male, age 61, both hemispheres 3.7
2484 Female, age 94, left hemisphere 2.5
2393 Male, age 80, right hemisphere 2.2
2821 Male, age 75, both hemispheres 2.2
Nucleus of the diagonal band
nTPM: 2.2
1812 Female, age 91, both hemispheres 2.4
2775 Male, age 80, right hemisphere 2.4
1979 Male, age 74, unknown 2.2
2029 Male, age 61, right hemisphere 2.2
2195 Female, age 85, both hemispheres 1.8
Olfactory tubercle
nTPM: 2.3
2856 Male, age 75, right hemisphere 2.6
1846 Male, age 80, right hemisphere 2.2
2487 Female, age 94, left hemisphere 2.2
1998 Female, age 91, both hemispheres 2.0
Putamen
nTPM: 2.0
2647 Male, age 75, left hemisphere 2.8
2482 Female, age 94, left hemisphere 2.3
1838 Male, age 80, right hemisphere 2.2
2489 Female, age 72, unknown 2.0
1937 Female, age 91, right hemisphere 1.8
2466 Female, age 79, unknown 1.7
1829 Male, age 74, unknown 1.4
Septal nuclei
nTPM: 2.7
2394 Male, age 61, left hemisphere 3.1
2199 Male, age 80, right hemisphere 2.9
2031 Female, age 72, unknown 2.8
2629 Female, age 94, right hemisphere 2.6
1960 Male, age 74, unknown 2.5
2059 Female, age 85, both hemispheres 2.5
2009 Female, age 91, both hemispheres 2.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.5
Samples: 246

Max nTPM: 37.3
Min nTPM: 0.5
Std nTPM: 2.4
Median nTPM: 2.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 37.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 6.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 5.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 5.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 5.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 5.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 4.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 4.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 4.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 4.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 4.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.5
Samples: 246

Max nTPM: 10.1
Min nTPM: 0.4
Std nTPM: 1.3
Median nTPM: 2.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 10.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 9.6
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 8.6
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 7.1
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 6.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 6.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 6.0
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 6.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 5.7
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 5.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 5.0
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Brain - Putamen (basal ganglia)
Average nTPM: 2.7
Samples: 205

Max nTPM: 6.8
Min nTPM: 0.5
Std nTPM: 1.1
Median nTPM: 2.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 6.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 5.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 5.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 5.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 5.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 5.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 5.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 5.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 4.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 4.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 4.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.1
FF:10161-103A8 76 years, female 0.3
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.6
Pig sample Sample description nTPM
Caudate
nTPM: 0.5
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.5
Sample C Male 0.5
Sample D Male 0.4
Putamen
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.3
Sample A Female 0.4
Sample B Female 0.4
Sample C Male 0.6
Sample D Male 0.3
Septum
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.5
Sample C Male 0.9
Sample D Male 0.6
Ventral pallidum
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.6
Sample C Male 0.7
Sample D Male 0.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Male 0.2
Sample B Male 0.2
Sample C Female 0.3
Sample D Female 0.1
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Male 0.4
Sample B Male 0.2
Sample C Female 0.1
Sample D Female 0.2
Ventral forebrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Male 0.2
Sample B Male 0.5
Sample C Female 0.3
Sample D Female 0.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69540429 Antisense, RP_050426_01_G06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69540429 Antisense, RP_050426_01_G06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.