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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.2 nTPM
HPA:33.2 nTPM
GTEx:24.3 nTPM
FANTOM5:18.1 Scaled Tags Per Million
Pig:13.3 nTPM
Mouse:46.6 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.7
2019 Male, age 18, unknown 31.4
2411 Female, age 72, unknown 30.1
2586 Male, age 75, left hemisphere 30.0
2219 Male, age 76, both hemispheres 29.8
2666 Male, age 74, left hemisphere 29.4
1827 Male, age 72, unknown 29.1
2828 Female, age 72, unknown 27.1
1870 Female, age 42, unknown 26.8
1833 Male, age 53, unknown 26.6
1830 Male, age 51, unknown 26.5
Dorsal raphe nucleus
nTPM: 30.1
2298 Female, age 72, unknown 33.9
2750 Male, age 76, both hemispheres 31.2
2047 Male, age 72, unknown 31.1
1828 Male, age 53, unknown 28.0
2016 Female, age 72, unknown 26.2
Inferior colliculus
nTPM: 29.1
2097 Female, age 72, unknown 32.7
1848 Female, age 42, unknown 28.8
1890 Male, age 53, unknown 28.4
2849 Male, age 72, unknown 26.5
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Pedunculopontine tegmental nucleus
nTPM: 30.0
1921 Female, age 85, both hemispheres 32.6
2334 Male, age 80, both hemispheres 31.1
2338 Male, age 61, both hemispheres 26.2
Periaquaductal grey, anterior
nTPM: 30.8
2502 Female, age 75, unknown 31.2
1947 Male, age 18, unknown 30.8
1795 Male, age 51, unknown 30.4
Periaquaductal grey, dorsal
nTPM: 28.1
1840 Male, age 53, unknown 30.2
2464 Female, age 72, unknown 29.0
1831 Male, age 72, unknown 27.4
2850 Male, age 76, both hemispheres 25.8
Periaquaductal grey, lateral
nTPM: 26.1
2272 Male, age 74, both hemispheres 26.6
2140 Male, age 76, both hemispheres 26.0
2053 Male, age 18, unknown 25.7
Pretectal area
nTPM: 31.0
1944 Female, age 72, unknown 37.3
1816 Male, age 51, unknown 36.7
2007 Male, age 72, unknown 36.2
1817 Female, age 42, unknown 34.3
1815 Male, age 53, unknown 32.7
2224 Female, age 72, unknown 29.6
2667 Female, age 75, unknown 28.5
2825 Male, age 18, unknown 26.9
2316 Male, age 76, right hemisphere 26.6
2273 Male, age 74, both hemispheres 26.2
2407 Male, age 75, both hemispheres 25.5
Red nucleus
nTPM: 26.3
2584 Male, age 75, left hemisphere 29.7
2785 Male, age 18, unknown 29.7
1821 Female, age 72, unknown 27.6
2725 Female, age 75, unknown 27.5
1954 Female, age 42, unknown 25.8
2588 Male, age 74, left hemisphere 25.7
2503 Female, age 72, unknown 25.4
2227 Male, age 72, unknown 25.3
1904 Male, age 53, unknown 25.2
2769 Male, age 72, unknown 25.2
2823 Male, age 76, right hemisphere 25.2
1865 Male, age 51, unknown 23.7
Substantia nigra
nTPM: 32.0
1941 Male, age 53, unknown 36.0
2665 Male, age 74, both hemispheres 35.5
2241 Male, age 72, unknown 35.1
1916 Female, age 42, unknown 34.5
1889 Female, age 72, unknown 33.2
1851 Male, age 51, unknown 32.2
2409 Female, age 72, unknown 29.5
2583 Male, age 75, right hemisphere 29.3
2590 Female, age 75, unknown 28.5
2699 Male, age 18, unknown 26.0
Superior colliculus
nTPM: 28.7
2261 Male, age 18, unknown 32.3
2087 Female, age 72, unknown 31.6
2668 Female, age 75, unknown 31.6
1796 Male, age 53, unknown 29.0
1895 Male, age 76, right hemisphere 28.5
1839 Male, age 51, unknown 28.1
2664 Male, age 75, both hemispheres 27.1
2587 Male, age 74, left hemisphere 26.9
1913 Female, age 42, unknown 26.2
1995 Male, age 72, unknown 26.0
Ventral tegmental area
nTPM: 30.6
2218 Male, age 76, both hemispheres 32.5
2410 Female, age 72, unknown 32.4
1942 Male, age 51, unknown 32.1
1915 Female, age 42, unknown 31.9
2021 Male, age 53, unknown 28.4
2223 Female, age 72, unknown 26.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.3
Samples: 139

Max nTPM: 78.4
Min nTPM: 8.9
Std nTPM: 10.2
Median nTPM: 22.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 78.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 56.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 56.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 49.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 46.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 45.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 42.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 41.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 41.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 38.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 37.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.1
FF:10158-103A5 76 years, female 18.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.3
Pig sample Sample description nTPM
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 17.4
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 9.7
Sample C Male 17.4
Sample D Male 14.6
Periaqueductal gray
nTPM: 9.1
Samples: 3

Max nTPM: 11.7
Min nTPM: 7.7
Sample B Female 7.8
Sample C Male 11.7
Sample D Male 7.7
Substantia nigra
nTPM: 11.3
Samples: 4

Max nTPM: 18.4
Min nTPM: 4.4
Sample A Female 18.4
Sample B Female 9.0
Sample C Male 13.4
Sample D Male 4.4
Superior colliculi
nTPM: 13.3
Samples: 4

Max nTPM: 16.2
Min nTPM: 8.5
Sample A Female 15.4
Sample B Female 8.5
Sample C Male 16.2
Sample D Male 13.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.6
Samples: 4

Max nTPM: 47.1
Min nTPM: 45.3
Sample A Male 46.8
Sample B Male 45.3
Sample C Female 47.1
Sample D Female 47.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
74988572 Antisense, RP_060315_05_F02, Mouse strain C57BL/6J (56 days, male) 2.1
70474893 Antisense, RP_050623_01_C09, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.