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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.9 nTPM
HPA:30.9 nTPM
GTEx:24.8 nTPM
FANTOM5:126.9 Scaled Tags Per Million
Pig:25.3 nTPM
Mouse:16.7 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.5
2828 Female, age 72, unknown 34.5
2586 Male, age 75, left hemisphere 31.3
2666 Male, age 74, left hemisphere 30.4
1830 Male, age 51, unknown 30.2
2019 Male, age 18, unknown 29.4
1833 Male, age 53, unknown 29.3
1870 Female, age 42, unknown 29.0
2411 Female, age 72, unknown 27.5
2219 Male, age 76, both hemispheres 27.3
1827 Male, age 72, unknown 26.6
Dorsal raphe nucleus
nTPM: 29.0
2016 Female, age 72, unknown 30.6
1828 Male, age 53, unknown 30.5
2047 Male, age 72, unknown 28.4
2750 Male, age 76, both hemispheres 28.1
2298 Female, age 72, unknown 27.4
Inferior colliculus
nTPM: 26.8
2849 Male, age 72, unknown 27.5
1890 Male, age 53, unknown 27.3
1848 Female, age 42, unknown 27.0
2097 Female, age 72, unknown 25.4
Median raphe nucleus
nTPM: 25.6
2220 Male, age 76, midline 25.6
Pedunculopontine tegmental nucleus
nTPM: 28.9
2338 Male, age 61, both hemispheres 34.0
2334 Male, age 80, both hemispheres 27.6
1921 Female, age 85, both hemispheres 24.9
Periaquaductal grey, anterior
nTPM: 25.6
1795 Male, age 51, unknown 27.3
2502 Female, age 75, unknown 25.0
1947 Male, age 18, unknown 24.5
Periaquaductal grey, dorsal
nTPM: 27.7
1831 Male, age 72, unknown 30.1
2850 Male, age 76, both hemispheres 29.2
1840 Male, age 53, unknown 25.9
2464 Female, age 72, unknown 25.6
Periaquaductal grey, lateral
nTPM: 27.8
2140 Male, age 76, both hemispheres 28.6
2053 Male, age 18, unknown 28.0
2272 Male, age 74, both hemispheres 26.7
Pretectal area
nTPM: 27.3
2407 Male, age 75, both hemispheres 31.0
1815 Male, age 53, unknown 29.1
2667 Female, age 75, unknown 28.5
2316 Male, age 76, right hemisphere 28.2
2825 Male, age 18, unknown 27.8
2273 Male, age 74, both hemispheres 27.7
1817 Female, age 42, unknown 27.4
1944 Female, age 72, unknown 25.6
2224 Female, age 72, unknown 25.3
2007 Male, age 72, unknown 25.2
1816 Male, age 51, unknown 24.2
Red nucleus
nTPM: 30.9
1865 Male, age 51, unknown 35.1
2769 Male, age 72, unknown 33.0
1821 Female, age 72, unknown 32.2
2227 Male, age 72, unknown 32.0
2823 Male, age 76, right hemisphere 31.9
2503 Female, age 72, unknown 31.3
1904 Male, age 53, unknown 31.2
1954 Female, age 42, unknown 31.0
2785 Male, age 18, unknown 30.4
2584 Male, age 75, left hemisphere 29.5
2725 Female, age 75, unknown 28.5
2588 Male, age 74, left hemisphere 25.3
Substantia nigra
nTPM: 30.6
2699 Male, age 18, unknown 35.8
2665 Male, age 74, both hemispheres 34.8
2590 Female, age 75, unknown 33.1
2409 Female, age 72, unknown 32.9
2583 Male, age 75, right hemisphere 32.3
1916 Female, age 42, unknown 29.4
1851 Male, age 51, unknown 28.6
1941 Male, age 53, unknown 28.0
1889 Female, age 72, unknown 25.5
2241 Male, age 72, unknown 25.3
Superior colliculus
nTPM: 28.6
1995 Male, age 72, unknown 34.0
1913 Female, age 42, unknown 31.6
2664 Male, age 75, both hemispheres 30.9
2587 Male, age 74, left hemisphere 29.5
2087 Female, age 72, unknown 27.6
2668 Female, age 75, unknown 27.5
1839 Male, age 51, unknown 27.0
1796 Male, age 53, unknown 26.7
1895 Male, age 76, right hemisphere 26.3
2261 Male, age 18, unknown 25.1
Ventral tegmental area
nTPM: 30.2
2021 Male, age 53, unknown 32.2
1942 Male, age 51, unknown 30.7
2223 Female, age 72, unknown 30.4
2410 Female, age 72, unknown 30.0
2218 Male, age 76, both hemispheres 29.6
1915 Female, age 42, unknown 28.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.8
Samples: 139

Max nTPM: 46.3
Min nTPM: 7.2
Std nTPM: 6.6
Median nTPM: 24.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 46.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 43.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 38.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 37.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 37.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 36.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 35.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 35.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 34.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 34.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 34.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.9
FF:10158-103A5 76 years, female 126.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.3
Pig sample Sample description nTPM
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 38.8
Min nTPM: 13.8
Sample A Female 38.8
Sample B Female 21.2
Sample C Male 15.1
Sample D Male 13.8
Periaqueductal gray
nTPM: 20.1
Samples: 3

Max nTPM: 21.5
Min nTPM: 18.0
Sample B Female 21.5
Sample C Male 20.7
Sample D Male 18.0
Substantia nigra
nTPM: 25.3
Samples: 4

Max nTPM: 26.5
Min nTPM: 22.9
Sample A Female 25.9
Sample B Female 26.5
Sample C Male 22.9
Sample D Male 25.8
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 30.7
Min nTPM: 16.1
Sample A Female 25.9
Sample B Female 30.7
Sample C Male 16.1
Sample D Male 18.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.7
Samples: 4

Max nTPM: 17.6
Min nTPM: 16.0
Sample A Male 17.1
Sample B Male 16.0
Sample C Female 17.6
Sample D Female 16.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69015805 Antisense, RP_050315_01_G03, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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