ABOUTMENU
HELP
NEWS
SEC11A
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.7 nTPM
HPA:63.7 nTPM
GTEx:54.4 nTPM
FANTOM5:40.0 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:30.7 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 63.7
Sample id Sample description nTPM
Hippocampus
nTPM: 63.7
1898 Male, age 80, left hemisphere 65.1
2529 Female, age 94, left hemisphere 64.0
2621 Female, age 67, right hemisphere 64.0
1911 Female, age 85, right hemisphere 63.6
1855 Male, age 76, left hemisphere 62.8
2148 Female, age 91, left hemisphere 62.4
Dentate gyrus
nTPM: 62.1
2010 Male, age 76, both hemispheres 65.4
2530 Female, age 94, left hemisphere 64.0
2528 Male, age 74, both hemispheres 62.7
1927 Female, age 91, both hemispheres 60.9
2246 Female, age 85, both hemispheres 60.4
2531 Female, age 67, both hemispheres 59.5
Entorhinal gyrus
nTPM: 61.3
2117 Female, age 91, right hemisphere 64.8
2686 Male, age 75, right hemisphere 63.3
1787 Male, age 76, left hemisphere 62.0
1938 Female, age 85, left hemisphere 60.2
2764 Male, age 80, right hemisphere 59.8
2613 Female, age 94, left hemisphere 57.8
Hippocampus, CA1
nTPM: 62.9
2045 Male, age 76, both hemispheres 65.2
2527 Male, age 74, both hemispheres 63.1
1873 Female, age 85, both hemispheres 62.4
2082 Female, age 91, right hemisphere 62.3
2749 Male, age 80, left hemisphere 61.3
Hippocampus, CA2
nTPM: 63.5
1940 Female, age 85, left hemisphere 64.9
2113 Female, age 91, right hemisphere 64.2
1963 Male, age 80, left hemisphere 64.0
2249 Male, age 74, both hemispheres 63.7
2437 Female, age 94, left hemisphere 62.3
1892 Male, age 76, both hemispheres 61.9
Hippocampus, CA3
nTPM: 61.9
1867 Male, age 76, both hemispheres 63.7
1891 Female, age 85, both hemispheres 63.7
2436 Male, age 74, both hemispheres 63.6
2137 Male, age 80, left hemisphere 61.1
2861 Female, age 67, both hemispheres 60.2
2620 Female, age 94, left hemisphere 58.7
Parahippocampal cortex
nTPM: 61.0
2018 Male, age 76, both hemispheres 67.1
2692 Male, age 74, both hemispheres 62.2
1933 Female, age 85, both hemispheres 61.5
2245 Female, age 91, both hemispheres 60.9
2250 Female, age 67, right hemisphere 60.9
1990 Female, age 91, right hemisphere 60.5
1850 Male, age 80, both hemispheres 59.8
2693 Female, age 94, both hemispheres 59.8
2532 Female, age 72, left hemisphere 59.0
2622 Female, age 67, right hemisphere 58.6
Perirhinal gyrus
nTPM: 60.1
2521 Female, age 94, right hemisphere 61.9
1841 Female, age 85, right hemisphere 60.5
1847 Female, age 91, left hemisphere 59.6
2848 Male, age 76, right hemisphere 59.6
1794 Male, age 80, right hemisphere 58.7
Subiculum
nTPM: 62.9
2042 Male, age 76, both hemispheres 67.7
1901 Male, age 80, both hemispheres 64.5
2729 Female, age 91, right hemisphere 64.3
1977 Female, age 85, both hemispheres 61.7
2619 Male, age 74, both hemispheres 60.0
2438 Female, age 94, left hemisphere 59.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 54.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 54.4
Samples: 197

Max nTPM: 119.5
Min nTPM: 23.4
Std nTPM: 15.5
Median nTPM: 52.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 119.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 104.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 95.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 94.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 92.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 86.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 83.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 83.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 82.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 81.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 81.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 40.0
FF:10153-102I9 76 years, female 46.6
FF:10169-103B7 60 years, female 33.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 16.6
Samples: 4

Max nTPM: 19.4
Min nTPM: 14.4
Sample A Female 19.4
Sample B Female 17.5
Sample C Male 15.1
Sample D Male 14.4
Entorhinal cortex
nTPM: 15.1
Samples: 4

Max nTPM: 16.7
Min nTPM: 13.8
Sample A Female 15.6
Sample B Female 16.7
Sample C Male 14.1
Sample D Male 13.8
Subiculum
nTPM: 15.8
Samples: 4

Max nTPM: 18.0
Min nTPM: 14.1
Sample A Female 18.0
Sample B Female 14.1
Sample C Male 15.3
Sample D Male 15.7
Ventral hippocampus
nTPM: 16.3
Samples: 4

Max nTPM: 16.9
Min nTPM: 15.1
Sample A Female 16.4
Sample B Female 15.1
Sample C Male 16.8
Sample D Male 16.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 30.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.9
Samples: 4

Max nTPM: 30.3
Min nTPM: 23.5
Sample A Male 23.5
Sample B Male 25.9
Sample C Female 30.3
Sample D Female 27.8
Hippocampal formation
nTPM: 30.7
Samples: 4

Max nTPM: 35.0
Min nTPM: 27.5
Sample A Male 27.5
Sample B Male 28.4
Sample C Female 32.0
Sample D Female 35.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
69885678 Antisense, RP_050512_03_B11, Mouse strain C57BL/6J (56 days, male) 1.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.