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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.8 nTPM
HPA:44.8 nTPM
GTEx:66.7 nTPM
FANTOM5:160.8 Scaled Tags Per Million
Pig:22.8 nTPM
Mouse:509.1 nTPM
Allen mouse:19.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.7
2586 Male, age 75, left hemisphere 51.3
1827 Male, age 72, unknown 46.9
2666 Male, age 74, left hemisphere 42.9
2219 Male, age 76, both hemispheres 40.6
2828 Female, age 72, unknown 39.6
2411 Female, age 72, unknown 39.2
2019 Male, age 18, unknown 37.3
1830 Male, age 51, unknown 33.7
1833 Male, age 53, unknown 33.5
1870 Female, age 42, unknown 32.3
Dorsal raphe nucleus
nTPM: 36.8
2047 Male, age 72, unknown 40.4
2298 Female, age 72, unknown 39.9
2750 Male, age 76, both hemispheres 37.1
1828 Male, age 53, unknown 36.8
2016 Female, age 72, unknown 29.9
Inferior colliculus
nTPM: 34.6
2097 Female, age 72, unknown 36.6
2849 Male, age 72, unknown 35.7
1890 Male, age 53, unknown 34.0
1848 Female, age 42, unknown 31.9
Median raphe nucleus
nTPM: 44.8
2220 Male, age 76, midline 44.8
Pedunculopontine tegmental nucleus
nTPM: 38.2
2334 Male, age 80, both hemispheres 42.4
1921 Female, age 85, both hemispheres 40.5
2338 Male, age 61, both hemispheres 31.6
Periaquaductal grey, anterior
nTPM: 43.8
1795 Male, age 51, unknown 47.3
1947 Male, age 18, unknown 43.1
2502 Female, age 75, unknown 41.0
Periaquaductal grey, dorsal
nTPM: 36.3
1831 Male, age 72, unknown 39.9
2850 Male, age 76, both hemispheres 37.4
1840 Male, age 53, unknown 35.9
2464 Female, age 72, unknown 32.1
Periaquaductal grey, lateral
nTPM: 35.8
2140 Male, age 76, both hemispheres 38.3
2272 Male, age 74, both hemispheres 35.2
2053 Male, age 18, unknown 33.8
Pretectal area
nTPM: 43.5
1816 Male, age 51, unknown 55.7
1817 Female, age 42, unknown 48.7
2667 Female, age 75, unknown 47.5
2007 Male, age 72, unknown 47.4
1944 Female, age 72, unknown 46.9
1815 Male, age 53, unknown 44.0
2407 Male, age 75, both hemispheres 42.5
2316 Male, age 76, right hemisphere 38.7
2825 Male, age 18, unknown 38.0
2224 Female, age 72, unknown 37.5
2273 Male, age 74, both hemispheres 31.0
Red nucleus
nTPM: 33.9
2584 Male, age 75, left hemisphere 47.4
2785 Male, age 18, unknown 36.6
2588 Male, age 74, left hemisphere 36.2
1821 Female, age 72, unknown 35.8
2725 Female, age 75, unknown 34.3
2823 Male, age 76, right hemisphere 32.7
2227 Male, age 72, unknown 32.3
2503 Female, age 72, unknown 31.8
2769 Male, age 72, unknown 31.3
1904 Male, age 53, unknown 30.7
1954 Female, age 42, unknown 30.2
1865 Male, age 51, unknown 28.1
Substantia nigra
nTPM: 40.7
1916 Female, age 42, unknown 55.5
1851 Male, age 51, unknown 47.6
1941 Male, age 53, unknown 44.4
2665 Male, age 74, both hemispheres 43.7
2699 Male, age 18, unknown 43.6
2583 Male, age 75, right hemisphere 40.6
1889 Female, age 72, unknown 39.0
2590 Female, age 75, unknown 36.7
2241 Male, age 72, unknown 30.0
2409 Female, age 72, unknown 25.4
Superior colliculus
nTPM: 38.7
1796 Male, age 53, unknown 44.9
2664 Male, age 75, both hemispheres 44.7
2087 Female, age 72, unknown 43.6
2261 Male, age 18, unknown 41.8
2668 Female, age 75, unknown 39.7
1913 Female, age 42, unknown 36.2
1995 Male, age 72, unknown 34.4
2587 Male, age 74, left hemisphere 34.3
1839 Male, age 51, unknown 33.5
1895 Male, age 76, right hemisphere 33.5
Ventral tegmental area
nTPM: 41.2
2218 Male, age 76, both hemispheres 46.2
1915 Female, age 42, unknown 43.6
2410 Female, age 72, unknown 42.4
2021 Male, age 53, unknown 40.6
1942 Male, age 51, unknown 38.4
2223 Female, age 72, unknown 36.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.7
Samples: 139

Max nTPM: 132.4
Min nTPM: 41.9
Std nTPM: 15.9
Median nTPM: 64.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 132.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 117.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 107.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 99.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 97.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 96.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 95.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 93.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 92.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 91.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 90.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 160.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 160.8
FF:10158-103A5 76 years, female 160.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.8
Pig sample Sample description nTPM
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 24.4
Min nTPM: 18.1
Sample A Female 21.7
Sample B Female 18.1
Sample C Male 24.4
Sample D Male 20.7
Periaqueductal gray
nTPM: 16.4
Samples: 3

Max nTPM: 18.3
Min nTPM: 14.1
Sample B Female 16.7
Sample C Male 18.3
Sample D Male 14.1
Substantia nigra
nTPM: 20.6
Samples: 4

Max nTPM: 25.9
Min nTPM: 15.6
Sample A Female 25.9
Sample B Female 17.0
Sample C Male 24.0
Sample D Male 15.6
Superior colliculi
nTPM: 22.8
Samples: 4

Max nTPM: 26.3
Min nTPM: 19.8
Sample A Female 24.6
Sample B Female 19.8
Sample C Male 26.3
Sample D Male 20.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 509.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 509.1
Samples: 4

Max nTPM: 514.3
Min nTPM: 499.0
Sample A Male 499.0
Sample B Male 512.6
Sample C Female 510.5
Sample D Female 514.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.7
293034 Antisense, RP_040609_01_E07, Mouse strain C57BL/6J (56 days, male) 23.9
71608264 Antisense, RP_050927_01_D06, Mouse strain C57BL/6J (56 days, male) 22.8
70813347 Antisense, RP_050712_03_G06, Mouse strain C57BL/6J (56 days, male) 12.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.