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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:10.3 nTPM
HPA:10.3 nTPM
GTEx:16.4 nTPM
FANTOM5:19.4 Scaled Tags Per Million
Pig:12.9 nTPM
Mouse:31.2 nTPM
Allen mouse:1.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041139
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 10.3
Sample id Sample description nTPM
Hippocampus
nTPM: 7.7
1898 Male, age 80, left hemisphere 9.0
1911 Female, age 85, right hemisphere 8.9
1855 Male, age 76, left hemisphere 8.0
2621 Female, age 67, right hemisphere 7.6
2529 Female, age 94, left hemisphere 7.1
2148 Female, age 91, left hemisphere 5.9
Dentate gyrus
nTPM: 8.3
1927 Female, age 91, both hemispheres 12.2
2010 Male, age 76, both hemispheres 10.2
2246 Female, age 85, both hemispheres 7.9
2528 Male, age 74, both hemispheres 7.6
2530 Female, age 94, left hemisphere 6.2
2531 Female, age 67, both hemispheres 5.7
Entorhinal gyrus
nTPM: 6.6
1787 Male, age 76, left hemisphere 7.4
2764 Male, age 80, right hemisphere 7.1
1938 Female, age 85, left hemisphere 6.9
2613 Female, age 94, left hemisphere 6.6
2117 Female, age 91, right hemisphere 5.8
2686 Male, age 75, right hemisphere 5.8
Hippocampus, CA1
nTPM: 10.0
2749 Male, age 80, left hemisphere 14.2
1873 Female, age 85, both hemispheres 11.6
2045 Male, age 76, both hemispheres 9.6
2527 Male, age 74, both hemispheres 7.5
2082 Female, age 91, right hemisphere 6.9
Hippocampus, CA2
nTPM: 10.3
1892 Male, age 76, both hemispheres 16.5
1963 Male, age 80, left hemisphere 14.7
2249 Male, age 74, both hemispheres 9.1
1940 Female, age 85, left hemisphere 8.0
2113 Female, age 91, right hemisphere 7.3
2437 Female, age 94, left hemisphere 6.3
Hippocampus, CA3
nTPM: 9.3
2137 Male, age 80, left hemisphere 12.6
1867 Male, age 76, both hemispheres 12.4
2436 Male, age 74, both hemispheres 8.9
2620 Female, age 94, left hemisphere 8.1
1891 Female, age 85, both hemispheres 7.1
2861 Female, age 67, both hemispheres 6.9
Parahippocampal cortex
nTPM: 7.3
2018 Male, age 76, both hemispheres 10.5
1850 Male, age 80, both hemispheres 8.0
1933 Female, age 85, both hemispheres 7.9
1990 Female, age 91, right hemisphere 7.8
2250 Female, age 67, right hemisphere 7.2
2245 Female, age 91, both hemispheres 7.1
2693 Female, age 94, both hemispheres 6.6
2532 Female, age 72, left hemisphere 6.4
2692 Male, age 74, both hemispheres 6.4
2622 Female, age 67, right hemisphere 5.0
Perirhinal gyrus
nTPM: 8.3
1841 Female, age 85, right hemisphere 9.5
1847 Female, age 91, left hemisphere 9.1
1794 Male, age 80, right hemisphere 8.3
2848 Male, age 76, right hemisphere 7.6
2521 Female, age 94, right hemisphere 7.0
Subiculum
nTPM: 7.4
1901 Male, age 80, both hemispheres 9.0
2438 Female, age 94, left hemisphere 8.6
2042 Male, age 76, both hemispheres 7.7
1977 Female, age 85, both hemispheres 7.6
2729 Female, age 91, right hemisphere 6.5
2619 Male, age 74, both hemispheres 4.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.4
Samples: 197

Max nTPM: 34.1
Min nTPM: 8.4
Std nTPM: 4.5
Median nTPM: 16.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 34.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 33.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 26.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 26.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 26.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 25.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 25.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 25.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 25.2
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 25.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 25.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 19.4
FF:10169-103B7 60 years, female 23.0
FF:10153-102I9 76 years, female 15.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 12.9
Samples: 4

Max nTPM: 14.6
Min nTPM: 10.7
Sample A Female 14.1
Sample B Female 14.6
Sample C Male 10.7
Sample D Male 12.1
Entorhinal cortex
nTPM: 10.8
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.3
Sample A Female 11.8
Sample B Female 12.1
Sample C Male 10.0
Sample D Male 9.3
Subiculum
nTPM: 10.6
Samples: 4

Max nTPM: 13.0
Min nTPM: 8.7
Sample A Female 13.0
Sample B Female 10.6
Sample C Male 9.9
Sample D Male 8.7
Ventral hippocampus
nTPM: 10.9
Samples: 4

Max nTPM: 13.0
Min nTPM: 9.1
Sample A Female 9.6
Sample B Female 9.1
Sample C Male 12.0
Sample D Male 13.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 31.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.2
Samples: 4

Max nTPM: 25.7
Min nTPM: 24.6
Sample A Male 24.6
Sample B Male 25.7
Sample C Female 25.1
Sample D Female 25.2
Hippocampal formation
nTPM: 31.2
Samples: 4

Max nTPM: 34.4
Min nTPM: 28.7
Sample A Male 32.1
Sample B Male 34.4
Sample C Female 29.6
Sample D Female 28.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.1
248567 Antisense, RP_040715_01_A03, Mouse strain C57BL/6J (56 days, male) 1.8
75750322 Antisense, RP_060518_04_G01, Mouse strain C57BL/6J (56 days, male) 0.8
77925143 Antisense, RP_070320_02_C04, Mouse strain C57BL/6J (56 days, male) 0.7
77932811 Antisense, RP_070320_02_C04, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.