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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:105.1 nTPM
HPA:105.1 nTPM
GTEx:174.5 nTPM
FANTOM5:74.9 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 105.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.7
2586 Male, age 75, left hemisphere 107.8
2411 Female, age 72, unknown 105.8
2828 Female, age 72, unknown 105.5
2019 Male, age 18, unknown 104.1
1827 Male, age 72, unknown 103.8
1870 Female, age 42, unknown 101.4
1833 Male, age 53, unknown 98.8
1830 Male, age 51, unknown 97.8
2666 Male, age 74, left hemisphere 96.2
2219 Male, age 76, both hemispheres 95.8
Dorsal raphe nucleus
nTPM: 103.0
2298 Female, age 72, unknown 107.1
2016 Female, age 72, unknown 103.9
2750 Male, age 76, both hemispheres 102.7
1828 Male, age 53, unknown 101.1
2047 Male, age 72, unknown 100.4
Inferior colliculus
nTPM: 100.2
2097 Female, age 72, unknown 106.2
1890 Male, age 53, unknown 100.9
1848 Female, age 42, unknown 99.9
2849 Male, age 72, unknown 93.6
Median raphe nucleus
nTPM: 98.2
2220 Male, age 76, midline 98.2
Pedunculopontine tegmental nucleus
nTPM: 101.5
2334 Male, age 80, both hemispheres 102.6
1921 Female, age 85, both hemispheres 100.9
2338 Male, age 61, both hemispheres 100.9
Periaquaductal grey, anterior
nTPM: 104.6
2502 Female, age 75, unknown 107.1
1795 Male, age 51, unknown 105.1
1947 Male, age 18, unknown 101.6
Periaquaductal grey, dorsal
nTPM: 98.6
1831 Male, age 72, unknown 100.0
1840 Male, age 53, unknown 99.8
2464 Female, age 72, unknown 98.7
2850 Male, age 76, both hemispheres 96.1
Periaquaductal grey, lateral
nTPM: 98.5
2053 Male, age 18, unknown 99.4
2140 Male, age 76, both hemispheres 99.0
2272 Male, age 74, both hemispheres 97.3
Pretectal area
nTPM: 102.0
2007 Male, age 72, unknown 108.2
1816 Male, age 51, unknown 103.7
1817 Female, age 42, unknown 103.7
2667 Female, age 75, unknown 102.9
2273 Male, age 74, both hemispheres 102.5
2224 Female, age 72, unknown 101.5
2316 Male, age 76, right hemisphere 101.2
1815 Male, age 53, unknown 99.7
2825 Male, age 18, unknown 99.7
1944 Female, age 72, unknown 99.5
2407 Male, age 75, both hemispheres 99.3
Red nucleus
nTPM: 105.1
2503 Female, age 72, unknown 110.7
1821 Female, age 72, unknown 110.4
2227 Male, age 72, unknown 108.6
1954 Female, age 42, unknown 107.5
2785 Male, age 18, unknown 106.7
2769 Male, age 72, unknown 106.3
1904 Male, age 53, unknown 105.6
1865 Male, age 51, unknown 104.7
2588 Male, age 74, left hemisphere 102.8
2725 Female, age 75, unknown 102.0
2823 Male, age 76, right hemisphere 100.5
2584 Male, age 75, left hemisphere 95.2
Substantia nigra
nTPM: 103.8
1916 Female, age 42, unknown 111.6
1851 Male, age 51, unknown 109.5
2409 Female, age 72, unknown 107.5
1941 Male, age 53, unknown 103.1
2583 Male, age 75, right hemisphere 103.1
1889 Female, age 72, unknown 102.0
2699 Male, age 18, unknown 101.0
2241 Male, age 72, unknown 100.9
2590 Female, age 75, unknown 100.5
2665 Male, age 74, both hemispheres 98.5
Superior colliculus
nTPM: 102.4
1796 Male, age 53, unknown 108.0
2261 Male, age 18, unknown 104.7
2668 Female, age 75, unknown 104.7
2664 Male, age 75, both hemispheres 102.7
2087 Female, age 72, unknown 102.6
1895 Male, age 76, right hemisphere 101.2
1995 Male, age 72, unknown 100.8
1913 Female, age 42, unknown 100.1
2587 Male, age 74, left hemisphere 100.0
1839 Male, age 51, unknown 99.0
Ventral tegmental area
nTPM: 103.6
1915 Female, age 42, unknown 107.6
2223 Female, age 72, unknown 105.8
1942 Male, age 51, unknown 103.4
2021 Male, age 53, unknown 102.3
2410 Female, age 72, unknown 102.1
2218 Male, age 76, both hemispheres 100.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 174.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 174.5
Samples: 139

Max nTPM: 488.8
Min nTPM: 70.6
Std nTPM: 52.7
Median nTPM: 166.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 488.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 392.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 309.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 295.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 281.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 272.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 265.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 262.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 259.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 257.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 255.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.9
FF:10158-103A5 76 years, female 74.9

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