ABOUTMENU
HELP
NEWS
NT5C3B
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:12.8 nTPM
HPA:12.8 nTPM
GTEx:16.6 nTPM
FANTOM5:94.7 Scaled Tags Per Million
Pig:47.6 nTPM
Mouse:39.4 nTPM
Allen mouse:2.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA030786Antibody HPA057095
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.3
1857 Female, age 85, left hemisphere 13.7
2846 Female, age 79, unknown 13.7
1854 Male, age 80, left hemisphere 13.1
1781 Male, age 74, unknown 12.7
2290 Female, age 72, unknown 12.0
2289 Male, age 61, right hemisphere 11.5
2288 Male, age 75, left hemisphere 11.3
2481 Female, age 94, left hemisphere 10.5
Claustrum
nTPM: 11.3
2568 Male, age 61, both hemispheres 11.9
2645 Female, age 72, unknown 11.9
2392 Female, age 94, both hemispheres 11.8
1956 Male, age 74, unknown 11.7
2284 Female, age 91, both hemispheres 11.5
2491 Male, age 75, both hemispheres 11.2
2196 Female, age 79, unknown 11.0
2198 Male, age 80, both hemispheres 10.7
2292 Female, age 85, both hemispheres 10.1
Globus pallidus, externus
nTPM: 10.1
2567 Female, age 72, unknown 10.8
2395 Male, age 75, both hemispheres 10.5
1996 Male, age 80, right hemisphere 9.8
2772 Female, age 79, unknown 9.8
2646 Male, age 61, right hemisphere 9.7
Globus pallidus, internus
nTPM: 10.4
2111 Female, age 85, right hemisphere 10.9
2037 Male, age 80, right hemisphere 10.6
1818 Male, age 74, unknown 10.5
2778 Female, age 91, both hemispheres 10.5
2287 Male, age 75, right hemisphere 10.3
2566 Female, age 72, unknown 10.3
2483 Female, age 94, right hemisphere 9.9
Nucleus accumbens
nTPM: 12.2
1856 Female, age 91, right hemisphere 13.4
1783 Male, age 74, unknown 12.9
2824 Male, age 61, right hemisphere 12.7
1806 Female, age 85, left hemisphere 12.6
2286 Male, age 75, left hemisphere 12.0
2732 Male, age 80, right hemisphere 11.6
2391 Female, age 94, left hemisphere 11.3
2698 Female, age 72, unknown 11.3
Nucleus basalis of Meynert
nTPM: 11.1
2393 Male, age 80, right hemisphere 12.5
2484 Female, age 94, left hemisphere 11.3
2821 Male, age 75, both hemispheres 10.5
2569 Male, age 61, both hemispheres 10.3
Nucleus of the diagonal band
nTPM: 12.1
1979 Male, age 74, unknown 13.0
2029 Male, age 61, right hemisphere 12.8
2775 Male, age 80, right hemisphere 11.7
1812 Female, age 91, both hemispheres 11.5
2195 Female, age 85, both hemispheres 11.3
Olfactory tubercle
nTPM: 12.1
1998 Female, age 91, both hemispheres 13.3
2856 Male, age 75, right hemisphere 12.5
2487 Female, age 94, left hemisphere 11.8
1846 Male, age 80, right hemisphere 10.9
Putamen
nTPM: 12.8
1838 Male, age 80, right hemisphere 15.2
1937 Female, age 91, right hemisphere 13.8
2466 Female, age 79, unknown 13.5
1829 Male, age 74, unknown 12.7
2489 Female, age 72, unknown 12.6
2647 Male, age 75, left hemisphere 11.2
2482 Female, age 94, left hemisphere 10.7
Septal nuclei
nTPM: 11.6
1960 Male, age 74, unknown 13.2
2009 Female, age 91, both hemispheres 12.1
2059 Female, age 85, both hemispheres 11.7
2199 Male, age 80, right hemisphere 11.4
2394 Male, age 61, left hemisphere 11.3
2031 Female, age 72, unknown 11.2
2629 Female, age 94, right hemisphere 10.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.3
Samples: 246

Max nTPM: 86.2
Min nTPM: 1.8
Std nTPM: 10.4
Median nTPM: 10.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 86.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 63.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 42.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 42.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 41.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 40.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 40.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 39.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 34.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 33.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 33.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.6
Samples: 246

Max nTPM: 48.0
Min nTPM: 2.6
Std nTPM: 9.1
Median nTPM: 15.0
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 48.0
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 42.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 42.1
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 40.6
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 38.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 38.5
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 38.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 36.4
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 35.0
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 34.8
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 34.5
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 12.8
Samples: 205

Max nTPM: 56.8
Min nTPM: 1.4
Std nTPM: 8.8
Median nTPM: 9.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 56.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 42.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 40.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 37.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 37.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 36.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 34.2
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 31.2
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 31.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 30.7
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 30.6
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 77.5
FF:10164-103B2 76 years, female 77.5
Globus pallidus
Scaled Tags Per Million: 51.7
FF:10175-103C4 60 years, female 56.0
FF:10161-103A8 76 years, female 47.5
Nucleus accumbens
Scaled Tags Per Million: 94.7
FF:10037-101F1 23-56 years, mixed 94.7
Putamen
Scaled Tags Per Million: 94.0
FF:10176-103C5 60 years, female 94.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 47.6
Pig sample Sample description nTPM
Caudate
nTPM: 33.4
Samples: 4

Max nTPM: 40.6
Min nTPM: 22.8
Sample A Female 22.8
Sample B Female 38.0
Sample C Male 40.6
Sample D Male 32.1
Putamen
nTPM: 47.6
Samples: 4

Max nTPM: 73.3
Min nTPM: 32.2
Sample A Female 32.2
Sample B Female 43.5
Sample C Male 73.3
Sample D Male 41.5
Septum
nTPM: 35.2
Samples: 4

Max nTPM: 42.8
Min nTPM: 29.7
Sample A Female 29.7
Sample B Female 34.9
Sample C Male 42.8
Sample D Male 33.4
Ventral pallidum
nTPM: 35.9
Samples: 4

Max nTPM: 57.7
Min nTPM: 24.3
Sample A Female 24.3
Sample B Female 35.9
Sample C Male 57.7
Sample D Male 25.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 39.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 38.5
Samples: 4

Max nTPM: 39.0
Min nTPM: 37.9
Sample A Male 39.0
Sample B Male 38.4
Sample C Female 38.5
Sample D Female 37.9
Septum
nTPM: 39.4
Samples: 4

Max nTPM: 42.7
Min nTPM: 35.3
Sample A Male 37.3
Sample B Male 42.7
Sample C Female 42.2
Sample D Female 35.3
Ventral forebrain
nTPM: 39.2
Samples: 4

Max nTPM: 42.7
Min nTPM: 35.9
Sample A Male 40.3
Sample B Male 37.9
Sample C Female 42.7
Sample D Female 35.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.3
70445640 Antisense, RP_050614_04_C06, Mouse strain C57BL/6J (56 days, male) 2.3
Pallidum
Expression energy: 2.1
70445640 Antisense, RP_050614_04_C06, Mouse strain C57BL/6J (56 days, male) 2.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.