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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.8 nTPM
HPA:34.8 nTPM
GTEx:58.5 nTPM
FANTOM5:46.1 Scaled Tags Per Million
Pig:69.1 nTPM
Mouse:151.8 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.6
2586 Male, age 75, left hemisphere 34.7
2019 Male, age 18, unknown 33.7
1870 Female, age 42, unknown 33.6
2411 Female, age 72, unknown 33.3
1827 Male, age 72, unknown 33.2
1833 Male, age 53, unknown 32.9
1830 Male, age 51, unknown 32.3
2828 Female, age 72, unknown 31.7
2219 Male, age 76, both hemispheres 30.4
2666 Male, age 74, left hemisphere 30.2
Dorsal raphe nucleus
nTPM: 31.7
2750 Male, age 76, both hemispheres 33.3
1828 Male, age 53, unknown 32.4
2298 Female, age 72, unknown 31.7
2016 Female, age 72, unknown 30.7
2047 Male, age 72, unknown 30.6
Inferior colliculus
nTPM: 31.9
2097 Female, age 72, unknown 32.7
1848 Female, age 42, unknown 32.6
1890 Male, age 53, unknown 31.9
2849 Male, age 72, unknown 30.5
Median raphe nucleus
nTPM: 31.5
2220 Male, age 76, midline 31.5
Pedunculopontine tegmental nucleus
nTPM: 32.5
2334 Male, age 80, both hemispheres 33.2
2338 Male, age 61, both hemispheres 32.4
1921 Female, age 85, both hemispheres 31.9
Periaquaductal grey, anterior
nTPM: 32.9
1947 Male, age 18, unknown 33.7
2502 Female, age 75, unknown 33.3
1795 Male, age 51, unknown 31.6
Periaquaductal grey, dorsal
nTPM: 30.5
1831 Male, age 72, unknown 31.7
2850 Male, age 76, both hemispheres 30.9
1840 Male, age 53, unknown 30.3
2464 Female, age 72, unknown 29.0
Periaquaductal grey, lateral
nTPM: 30.5
2272 Male, age 74, both hemispheres 31.7
2053 Male, age 18, unknown 30.5
2140 Male, age 76, both hemispheres 29.5
Pretectal area
nTPM: 32.7
2007 Male, age 72, unknown 35.6
1816 Male, age 51, unknown 34.8
1815 Male, age 53, unknown 34.3
1817 Female, age 42, unknown 33.9
2825 Male, age 18, unknown 32.9
1944 Female, age 72, unknown 32.7
2667 Female, age 75, unknown 32.3
2273 Male, age 74, both hemispheres 32.1
2407 Male, age 75, both hemispheres 31.2
2224 Female, age 72, unknown 30.1
2316 Male, age 76, right hemisphere 29.5
Red nucleus
nTPM: 34.8
1821 Female, age 72, unknown 36.1
2769 Male, age 72, unknown 36.0
1954 Female, age 42, unknown 35.4
2227 Male, age 72, unknown 35.4
2785 Male, age 18, unknown 35.4
2503 Female, age 72, unknown 35.0
2584 Male, age 75, left hemisphere 34.5
2725 Female, age 75, unknown 34.4
1865 Male, age 51, unknown 34.3
1904 Male, age 53, unknown 34.3
2823 Male, age 76, right hemisphere 34.0
2588 Male, age 74, left hemisphere 33.2
Substantia nigra
nTPM: 33.6
2665 Male, age 74, both hemispheres 36.0
1916 Female, age 42, unknown 35.2
1889 Female, age 72, unknown 35.1
1851 Male, age 51, unknown 34.6
2409 Female, age 72, unknown 33.7
1941 Male, age 53, unknown 33.6
2583 Male, age 75, right hemisphere 33.5
2699 Male, age 18, unknown 32.2
2590 Female, age 75, unknown 32.0
2241 Male, age 72, unknown 30.0
Superior colliculus
nTPM: 32.6
2668 Female, age 75, unknown 34.2
1913 Female, age 42, unknown 33.8
2087 Female, age 72, unknown 33.4
1895 Male, age 76, right hemisphere 33.0
1995 Male, age 72, unknown 32.9
1839 Male, age 51, unknown 32.3
2587 Male, age 74, left hemisphere 32.1
2664 Male, age 75, both hemispheres 31.8
1796 Male, age 53, unknown 31.6
2261 Male, age 18, unknown 31.1
Ventral tegmental area
nTPM: 32.2
2223 Female, age 72, unknown 33.6
2410 Female, age 72, unknown 33.3
1915 Female, age 42, unknown 33.2
1942 Male, age 51, unknown 31.3
2218 Male, age 76, both hemispheres 31.0
2021 Male, age 53, unknown 30.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.5
Samples: 139

Max nTPM: 95.6
Min nTPM: 24.9
Std nTPM: 12.5
Median nTPM: 57.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 95.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 92.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 89.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 89.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 87.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 87.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 85.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 84.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 82.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 82.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 81.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.1
FF:10158-103A5 76 years, female 46.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.1
Pig sample Sample description nTPM
Midbrain
nTPM: 69.1
Samples: 4

Max nTPM: 105.9
Min nTPM: 53.4
Sample A Female 105.9
Sample B Female 62.3
Sample C Male 54.9
Sample D Male 53.4
Periaqueductal gray
nTPM: 49.6
Samples: 3

Max nTPM: 54.4
Min nTPM: 46.0
Sample B Female 48.5
Sample C Male 54.4
Sample D Male 46.0
Substantia nigra
nTPM: 65.2
Samples: 4

Max nTPM: 92.6
Min nTPM: 52.2
Sample A Female 92.6
Sample B Female 53.4
Sample C Male 62.7
Sample D Male 52.2
Superior colliculi
nTPM: 64.5
Samples: 4

Max nTPM: 85.8
Min nTPM: 48.8
Sample A Female 85.8
Sample B Female 48.8
Sample C Male 60.2
Sample D Male 63.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 151.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 151.8
Samples: 4

Max nTPM: 164.6
Min nTPM: 140.5
Sample A Male 164.6
Sample B Male 141.0
Sample C Female 140.5
Sample D Female 161.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
678683 Antisense, RP_040914_02_D02, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.