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IGFBP4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.1 nTPM
HPA:34.1 nTPM
GTEx:30.8 nTPM
FANTOM5:37.1 Scaled Tags Per Million
Pig:5.7 nTPM
Mouse:6.8 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.0
2586 Male, age 75, left hemisphere 31.6
1833 Male, age 53, unknown 27.4
1870 Female, age 42, unknown 25.9
2666 Male, age 74, left hemisphere 25.9
2828 Female, age 72, unknown 25.8
1830 Male, age 51, unknown 25.6
2019 Male, age 18, unknown 25.4
2411 Female, age 72, unknown 25.1
2219 Male, age 76, both hemispheres 23.8
1827 Male, age 72, unknown 23.5
Dorsal raphe nucleus
nTPM: 27.3
2298 Female, age 72, unknown 28.5
2047 Male, age 72, unknown 28.1
2016 Female, age 72, unknown 27.4
1828 Male, age 53, unknown 27.2
2750 Male, age 76, both hemispheres 25.4
Inferior colliculus
nTPM: 27.0
1890 Male, age 53, unknown 30.0
2849 Male, age 72, unknown 27.3
1848 Female, age 42, unknown 26.6
2097 Female, age 72, unknown 24.3
Median raphe nucleus
nTPM: 25.7
2220 Male, age 76, midline 25.7
Pedunculopontine tegmental nucleus
nTPM: 28.3
2338 Male, age 61, both hemispheres 32.7
2334 Male, age 80, both hemispheres 27.4
1921 Female, age 85, both hemispheres 24.9
Periaquaductal grey, anterior
nTPM: 25.1
2502 Female, age 75, unknown 26.3
1947 Male, age 18, unknown 25.2
1795 Male, age 51, unknown 23.7
Periaquaductal grey, dorsal
nTPM: 27.0
2850 Male, age 76, both hemispheres 29.3
1840 Male, age 53, unknown 28.2
2464 Female, age 72, unknown 25.8
1831 Male, age 72, unknown 24.6
Periaquaductal grey, lateral
nTPM: 26.5
2140 Male, age 76, both hemispheres 28.6
2053 Male, age 18, unknown 25.7
2272 Male, age 74, both hemispheres 25.2
Pretectal area
nTPM: 24.4
2825 Male, age 18, unknown 27.2
2316 Male, age 76, right hemisphere 26.7
2224 Female, age 72, unknown 24.8
1815 Male, age 53, unknown 24.5
2667 Female, age 75, unknown 24.3
2007 Male, age 72, unknown 23.8
1944 Female, age 72, unknown 23.7
2407 Male, age 75, both hemispheres 23.7
2273 Male, age 74, both hemispheres 23.6
1817 Female, age 42, unknown 23.5
1816 Male, age 51, unknown 22.4
Red nucleus
nTPM: 26.2
2584 Male, age 75, left hemisphere 32.3
1904 Male, age 53, unknown 27.0
2227 Male, age 72, unknown 26.6
2769 Male, age 72, unknown 26.5
2725 Female, age 75, unknown 26.4
1821 Female, age 72, unknown 26.2
2588 Male, age 74, left hemisphere 25.9
2785 Male, age 18, unknown 25.6
2823 Male, age 76, right hemisphere 25.1
1954 Female, age 42, unknown 24.5
2503 Female, age 72, unknown 24.5
1865 Male, age 51, unknown 23.4
Substantia nigra
nTPM: 34.1
1916 Female, age 42, unknown 50.9
2241 Male, age 72, unknown 47.0
1851 Male, age 51, unknown 45.3
2409 Female, age 72, unknown 34.9
2665 Male, age 74, both hemispheres 29.4
2699 Male, age 18, unknown 28.8
2583 Male, age 75, right hemisphere 27.1
1889 Female, age 72, unknown 26.5
2590 Female, age 75, unknown 26.2
1941 Male, age 53, unknown 24.7
Superior colliculus
nTPM: 25.3
1839 Male, age 51, unknown 29.4
2668 Female, age 75, unknown 26.7
1796 Male, age 53, unknown 26.2
2587 Male, age 74, left hemisphere 25.8
1895 Male, age 76, right hemisphere 25.1
2087 Female, age 72, unknown 24.7
2261 Male, age 18, unknown 24.7
2664 Male, age 75, both hemispheres 24.2
1995 Male, age 72, unknown 23.3
1913 Female, age 42, unknown 22.6
Ventral tegmental area
nTPM: 31.3
1915 Female, age 42, unknown 43.5
2410 Female, age 72, unknown 32.3
1942 Male, age 51, unknown 29.1
2218 Male, age 76, both hemispheres 28.0
2223 Female, age 72, unknown 27.9
2021 Male, age 53, unknown 27.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.8
Samples: 139

Max nTPM: 169.7
Min nTPM: 5.1
Std nTPM: 24.0
Median nTPM: 23.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 169.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 102.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 92.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 91.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 90.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 87.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 86.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 82.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 76.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 75.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 74.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.1
FF:10158-103A5 76 years, female 37.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.7
Pig sample Sample description nTPM
Midbrain
nTPM: 4.0
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.3
Sample A Female 3.6
Sample B Female 4.7
Sample C Male 3.3
Sample D Male 4.3
Periaqueductal gray
nTPM: 3.6
Samples: 3

Max nTPM: 3.8
Min nTPM: 3.3
Sample B Female 3.8
Sample C Male 3.7
Sample D Male 3.3
Substantia nigra
nTPM: 5.7
Samples: 4

Max nTPM: 8.2
Min nTPM: 3.8
Sample A Female 6.6
Sample B Female 8.2
Sample C Male 3.8
Sample D Male 4.1
Superior colliculi
nTPM: 5.1
Samples: 4

Max nTPM: 6.1
Min nTPM: 2.6
Sample A Female 6.1
Sample B Female 6.1
Sample C Male 2.6
Sample D Male 5.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.4
Sample A Male 7.6
Sample B Male 6.4
Sample C Female 6.7
Sample D Female 6.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
70431391 Antisense, RP_050614_02_G03, Mouse strain C57BL/6J (56 days, male) 1.1
71924311 Antisense, RP_050614_02_G03, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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