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SLC39A3
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:23.6 nTPM
HPA:23.6 nTPM
GTEx:25.9 nTPM
FANTOM5:15.0 Scaled Tags Per Million
Mouse:34.0 nTPM
Allen mouse:5.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042139Antibody HPA058526
Glial cells MediumNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.6
Sample id Sample description nTPM
Hippocampus
nTPM: 21.2
1855 Male, age 76, left hemisphere 24.5
1898 Male, age 80, left hemisphere 22.6
2148 Female, age 91, left hemisphere 21.5
2621 Female, age 67, right hemisphere 20.3
1911 Female, age 85, right hemisphere 19.5
2529 Female, age 94, left hemisphere 18.5
Dentate gyrus
nTPM: 22.1
2010 Male, age 76, both hemispheres 25.2
1927 Female, age 91, both hemispheres 23.4
2530 Female, age 94, left hemisphere 23.2
2531 Female, age 67, both hemispheres 22.5
2528 Male, age 74, both hemispheres 19.8
2246 Female, age 85, both hemispheres 18.7
Entorhinal gyrus
nTPM: 19.7
2613 Female, age 94, left hemisphere 22.8
1787 Male, age 76, left hemisphere 21.2
2764 Male, age 80, right hemisphere 20.9
1938 Female, age 85, left hemisphere 19.2
2686 Male, age 75, right hemisphere 17.1
2117 Female, age 91, right hemisphere 16.9
Hippocampus, CA1
nTPM: 23.6
2749 Male, age 80, left hemisphere 30.3
2045 Male, age 76, both hemispheres 29.0
1873 Female, age 85, both hemispheres 22.6
2527 Male, age 74, both hemispheres 19.7
2082 Female, age 91, right hemisphere 16.4
Hippocampus, CA2
nTPM: 20.8
1892 Male, age 76, both hemispheres 26.7
1963 Male, age 80, left hemisphere 25.0
2437 Female, age 94, left hemisphere 20.2
2249 Male, age 74, both hemispheres 18.8
1940 Female, age 85, left hemisphere 17.0
2113 Female, age 91, right hemisphere 16.9
Hippocampus, CA3
nTPM: 22.5
2137 Male, age 80, left hemisphere 27.4
1867 Male, age 76, both hemispheres 25.2
2861 Female, age 67, both hemispheres 23.7
2620 Female, age 94, left hemisphere 23.2
2436 Male, age 74, both hemispheres 18.3
1891 Female, age 85, both hemispheres 17.2
Parahippocampal cortex
nTPM: 18.6
2532 Female, age 72, left hemisphere 19.6
2245 Female, age 91, both hemispheres 19.4
2018 Male, age 76, both hemispheres 19.3
2622 Female, age 67, right hemisphere 18.9
2250 Female, age 67, right hemisphere 18.8
1933 Female, age 85, both hemispheres 18.4
2693 Female, age 94, both hemispheres 18.3
1990 Female, age 91, right hemisphere 18.0
2692 Male, age 74, both hemispheres 17.9
1850 Male, age 80, both hemispheres 17.6
Perirhinal gyrus
nTPM: 19.8
1794 Male, age 80, right hemisphere 21.4
2521 Female, age 94, right hemisphere 20.4
1841 Female, age 85, right hemisphere 20.0
1847 Female, age 91, left hemisphere 20.0
2848 Male, age 76, right hemisphere 17.3
Subiculum
nTPM: 18.3
1901 Male, age 80, both hemispheres 20.1
2042 Male, age 76, both hemispheres 19.4
1977 Female, age 85, both hemispheres 19.3
2729 Female, age 91, right hemisphere 18.1
2619 Male, age 74, both hemispheres 17.5
2438 Female, age 94, left hemisphere 15.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.9
Samples: 197

Max nTPM: 54.3
Min nTPM: 9.4
Std nTPM: 7.8
Median nTPM: 25.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 54.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 49.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 49.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 47.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 47.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 46.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 43.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 42.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 42.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 41.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 40.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.0
FF:10169-103B7 60 years, female 17.7
FF:10153-102I9 76 years, female 12.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 34.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 33.6
Samples: 4

Max nTPM: 37.1
Min nTPM: 32.2
Sample A Male 32.2
Sample B Male 32.4
Sample C Female 32.6
Sample D Female 37.1
Hippocampal formation
nTPM: 34.0
Samples: 4

Max nTPM: 39.2
Min nTPM: 28.2
Sample A Male 28.2
Sample B Male 32.9
Sample C Female 39.2
Sample D Female 35.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.9
2619 Antisense, RP_040526_02_A01, Mouse strain C57BL/6J (56 days, male) 5.9
2620 Antisense, RP_040526_02_A01, Mouse strain C57BL/6J (56 days, male) 5.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.