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TPGS1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.0 nTPM
HPA:4.0 nTPM
GTEx:18.0 nTPM
FANTOM5:20.5 Scaled Tags Per Million
Pig:9.4 nTPM
Mouse:18.4 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.2
2288 Male, age 75, left hemisphere 5.3
2290 Female, age 72, unknown 3.1
1781 Male, age 74, unknown 2.9
2289 Male, age 61, right hemisphere 2.1
2481 Female, age 94, left hemisphere 1.8
2846 Female, age 79, unknown 1.6
1857 Female, age 85, left hemisphere 0.8
1854 Male, age 80, left hemisphere 0.3
Claustrum
nTPM: 3.4
2292 Female, age 85, both hemispheres 4.7
2491 Male, age 75, both hemispheres 4.5
2284 Female, age 91, both hemispheres 4.1
2568 Male, age 61, both hemispheres 3.9
1956 Male, age 74, unknown 3.7
2198 Male, age 80, both hemispheres 3.7
2645 Female, age 72, unknown 3.4
2196 Female, age 79, unknown 1.3
2392 Female, age 94, both hemispheres 1.0
Globus pallidus, externus
nTPM: 4.0
2772 Female, age 79, unknown 6.4
1996 Male, age 80, right hemisphere 5.3
2646 Male, age 61, right hemisphere 3.5
2395 Male, age 75, both hemispheres 3.0
2567 Female, age 72, unknown 1.6
Globus pallidus, internus
nTPM: 3.6
2778 Female, age 91, both hemispheres 6.4
2287 Male, age 75, right hemisphere 5.5
2111 Female, age 85, right hemisphere 4.4
2037 Male, age 80, right hemisphere 2.9
2566 Female, age 72, unknown 2.4
1818 Male, age 74, unknown 1.9
2483 Female, age 94, right hemisphere 1.5
Nucleus accumbens
nTPM: 1.9
1783 Male, age 74, unknown 3.3
2732 Male, age 80, right hemisphere 3.1
2286 Male, age 75, left hemisphere 3.0
1806 Female, age 85, left hemisphere 2.4
2391 Female, age 94, left hemisphere 1.2
2824 Male, age 61, right hemisphere 0.8
2698 Female, age 72, unknown 0.7
1856 Female, age 91, right hemisphere 0.6
Nucleus basalis of Meynert
nTPM: 1.6
2569 Male, age 61, both hemispheres 3.6
2484 Female, age 94, left hemisphere 2.3
2821 Male, age 75, both hemispheres 0.7
2393 Male, age 80, right hemisphere 0.0
Nucleus of the diagonal band
nTPM: 3.1
2029 Male, age 61, right hemisphere 4.3
2775 Male, age 80, right hemisphere 3.8
1979 Male, age 74, unknown 2.9
2195 Female, age 85, both hemispheres 2.4
1812 Female, age 91, both hemispheres 2.2
Olfactory tubercle
nTPM: 2.2
1998 Female, age 91, both hemispheres 3.8
2487 Female, age 94, left hemisphere 2.3
2856 Male, age 75, right hemisphere 1.9
1846 Male, age 80, right hemisphere 0.9
Putamen
nTPM: 1.6
2466 Female, age 79, unknown 3.4
1937 Female, age 91, right hemisphere 2.3
2489 Female, age 72, unknown 1.8
2647 Male, age 75, left hemisphere 1.8
1829 Male, age 74, unknown 1.3
2482 Female, age 94, left hemisphere 0.7
1838 Male, age 80, right hemisphere 0.2
Septal nuclei
nTPM: 3.3
1960 Male, age 74, unknown 7.0
2059 Female, age 85, both hemispheres 5.6
2031 Female, age 72, unknown 5.2
2394 Male, age 61, left hemisphere 2.6
2009 Female, age 91, both hemispheres 1.6
2199 Male, age 80, right hemisphere 1.0
2629 Female, age 94, right hemisphere 0.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.4
Samples: 246

Max nTPM: 45.5
Min nTPM: 3.5
Std nTPM: 6.0
Median nTPM: 16.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 45.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 35.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 33.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 32.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 29.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 29.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 29.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 28.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 28.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 28.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 27.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.9
Samples: 246

Max nTPM: 39.6
Min nTPM: 4.1
Std nTPM: 6.1
Median nTPM: 17.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 39.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 36.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 34.1
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 32.5
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 30.0
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 29.9
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 29.4
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 29.1
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 29.1
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 28.4
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 28.4
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Brain - Putamen (basal ganglia)
Average nTPM: 18.0
Samples: 205

Max nTPM: 36.4
Min nTPM: 4.7
Std nTPM: 5.9
Median nTPM: 18.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 36.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 35.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 34.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 33.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 31.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 31.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 30.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 30.1
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 29.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 28.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 28.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.6
FF:10164-103B2 76 years, female 16.6
Globus pallidus
Scaled Tags Per Million: 14.1
FF:10161-103A8 76 years, female 17.3
FF:10175-103C4 60 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 20.5
FF:10037-101F1 23-56 years, mixed 20.5
Putamen
Scaled Tags Per Million: 17.7
FF:10176-103C5 60 years, female 17.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.4
Pig sample Sample description nTPM
Caudate
nTPM: 9.4
Samples: 4

Max nTPM: 10.4
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 10.2
Sample C Male 10.4
Sample D Male 9.2
Putamen
nTPM: 9.1
Samples: 4

Max nTPM: 12.0
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 8.7
Sample C Male 12.0
Sample D Male 8.8
Septum
nTPM: 8.4
Samples: 4

Max nTPM: 9.0
Min nTPM: 7.3
Sample A Female 9.0
Sample B Female 9.0
Sample C Male 8.1
Sample D Male 7.3
Ventral pallidum
nTPM: 8.4
Samples: 4

Max nTPM: 9.6
Min nTPM: 7.6
Sample A Female 7.6
Sample B Female 9.6
Sample C Male 8.8
Sample D Male 7.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.3
Samples: 4

Max nTPM: 21.3
Min nTPM: 6.9
Sample A Male 13.0
Sample B Male 21.3
Sample C Female 6.9
Sample D Female 7.9
Septum
nTPM: 18.4
Samples: 4

Max nTPM: 21.1
Min nTPM: 13.9
Sample A Male 21.1
Sample B Male 18.4
Sample C Female 20.3
Sample D Female 13.9
Ventral forebrain
nTPM: 15.1
Samples: 4

Max nTPM: 21.1
Min nTPM: 9.9
Sample A Male 17.8
Sample B Male 9.9
Sample C Female 21.1
Sample D Female 11.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
70724768 Antisense, RP_050705_02_F06, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
70724768 Antisense, RP_050705_02_F06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.