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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:10.3 nTPM
HPA:10.3 nTPM
GTEx:18.5 nTPM
FANTOM5:46.5 Scaled Tags Per Million
Pig:7.7 nTPM
Mouse:7.0 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019142Antibody HPA029401
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 10.3
Sample id Sample description nTPM
Hippocampus
nTPM: 8.0
2529 Female, age 94, left hemisphere 16.9
2148 Female, age 91, left hemisphere 8.3
2621 Female, age 67, right hemisphere 7.0
1898 Male, age 80, left hemisphere 5.7
1911 Female, age 85, right hemisphere 5.6
1855 Male, age 76, left hemisphere 4.6
Dentate gyrus
nTPM: 8.2
2246 Female, age 85, both hemispheres 12.2
2530 Female, age 94, left hemisphere 11.3
2528 Male, age 74, both hemispheres 7.8
2010 Male, age 76, both hemispheres 6.6
1927 Female, age 91, both hemispheres 5.8
2531 Female, age 67, both hemispheres 5.8
Entorhinal gyrus
nTPM: 7.1
2117 Female, age 91, right hemisphere 11.1
2686 Male, age 75, right hemisphere 10.1
1787 Male, age 76, left hemisphere 6.7
2764 Male, age 80, right hemisphere 6.7
1938 Female, age 85, left hemisphere 4.5
2613 Female, age 94, left hemisphere 3.6
Hippocampus, CA1
nTPM: 8.6
2082 Female, age 91, right hemisphere 21.3
2527 Male, age 74, both hemispheres 10.6
2045 Male, age 76, both hemispheres 6.2
1873 Female, age 85, both hemispheres 4.8
2749 Male, age 80, left hemisphere 0.0
Hippocampus, CA2
nTPM: 10.3
2113 Female, age 91, right hemisphere 15.5
2437 Female, age 94, left hemisphere 14.5
1940 Female, age 85, left hemisphere 12.1
2249 Male, age 74, both hemispheres 11.0
1892 Male, age 76, both hemispheres 6.4
1963 Male, age 80, left hemisphere 2.2
Hippocampus, CA3
nTPM: 6.9
2436 Male, age 74, both hemispheres 13.9
2861 Female, age 67, both hemispheres 9.2
1867 Male, age 76, both hemispheres 7.1
1891 Female, age 85, both hemispheres 4.9
2620 Female, age 94, left hemisphere 4.7
2137 Male, age 80, left hemisphere 1.6
Parahippocampal cortex
nTPM: 9.7
2622 Female, age 67, right hemisphere 19.1
2250 Female, age 67, right hemisphere 13.8
2532 Female, age 72, left hemisphere 11.5
2018 Male, age 76, both hemispheres 9.7
2245 Female, age 91, both hemispheres 8.9
1990 Female, age 91, right hemisphere 8.6
2692 Male, age 74, both hemispheres 7.9
2693 Female, age 94, both hemispheres 6.7
1933 Female, age 85, both hemispheres 6.6
1850 Male, age 80, both hemispheres 4.4
Perirhinal gyrus
nTPM: 6.4
2521 Female, age 94, right hemisphere 9.1
1794 Male, age 80, right hemisphere 8.3
1841 Female, age 85, right hemisphere 6.4
2848 Male, age 76, right hemisphere 4.4
1847 Female, age 91, left hemisphere 3.9
Subiculum
nTPM: 7.6
2438 Female, age 94, left hemisphere 12.2
2619 Male, age 74, both hemispheres 9.4
2729 Female, age 91, right hemisphere 8.4
1901 Male, age 80, both hemispheres 5.6
1977 Female, age 85, both hemispheres 5.2
2042 Male, age 76, both hemispheres 4.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.5
Samples: 197

Max nTPM: 42.0
Min nTPM: 4.8
Std nTPM: 6.7
Median nTPM: 17.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 42.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 39.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 36.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 33.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 33.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 32.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 31.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 31.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 31.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 31.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 31.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 46.5
FF:10153-102I9 76 years, female 65.8
FF:10169-103B7 60 years, female 27.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 1.9
Samples: 4

Max nTPM: 3.0
Min nTPM: 1.4
Sample A Female 1.4
Sample B Female 1.4
Sample C Male 3.0
Sample D Male 1.8
Entorhinal cortex
nTPM: 7.8
Samples: 4

Max nTPM: 12.1
Min nTPM: 5.4
Sample A Female 12.1
Sample B Female 5.4
Sample C Male 6.0
Sample D Male 7.5
Subiculum
nTPM: 6.9
Samples: 4

Max nTPM: 12.8
Min nTPM: 1.4
Sample A Female 5.9
Sample B Female 1.4
Sample C Male 7.5
Sample D Male 12.8
Ventral hippocampus
nTPM: 4.1
Samples: 4

Max nTPM: 8.0
Min nTPM: 2.0
Sample A Female 3.1
Sample B Female 2.0
Sample C Male 8.0
Sample D Male 3.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 7.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 7.0
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.3
Sample A Male 6.3
Sample B Male 7.6
Sample C Female 7.1
Sample D Female 7.1
Hippocampal formation
nTPM: 3.3
Samples: 4

Max nTPM: 4.6
Min nTPM: 2.0
Sample A Male 3.5
Sample B Male 3.0
Sample C Female 2.0
Sample D Female 4.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
291 Antisense, RP_Baylor_102698, Mouse strain C57BL/6J (56 days, male) 6.1
290 Antisense, RP_Baylor_102698, Mouse strain C57BL/6J (56 days, male) 3.8
77869097 Antisense, RP_070129_02_G03, Mouse strain C57BL/6J (56 days, male) 1.5

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.