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ARHGEF19
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.7 nTPM
HPA:0.7 nTPM
GTEx:1.3 nTPM
FANTOM5:1.4 Scaled Tags Per Million
Pig:0.8 nTPM
Mouse:11.6 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.7
1854 Male, age 80, left hemisphere 0.8
1857 Female, age 85, left hemisphere 0.8
2481 Female, age 94, left hemisphere 0.8
2289 Male, age 61, right hemisphere 0.7
2290 Female, age 72, unknown 0.7
1781 Male, age 74, unknown 0.6
2846 Female, age 79, unknown 0.6
2288 Male, age 75, left hemisphere 0.4
Claustrum
nTPM: 0.6
2284 Female, age 91, both hemispheres 0.8
2196 Female, age 79, unknown 0.7
1956 Male, age 74, unknown 0.5
2292 Female, age 85, both hemispheres 0.5
2392 Female, age 94, both hemispheres 0.5
2568 Male, age 61, both hemispheres 0.5
2645 Female, age 72, unknown 0.5
2198 Male, age 80, both hemispheres 0.4
2491 Male, age 75, both hemispheres 0.4
Globus pallidus, externus
nTPM: 0.7
2567 Female, age 72, unknown 0.8
2646 Male, age 61, right hemisphere 0.8
2395 Male, age 75, both hemispheres 0.7
2772 Female, age 79, unknown 0.6
1996 Male, age 80, right hemisphere 0.5
Globus pallidus, internus
nTPM: 0.7
2566 Female, age 72, unknown 1.0
2111 Female, age 85, right hemisphere 0.9
2483 Female, age 94, right hemisphere 0.8
1818 Male, age 74, unknown 0.7
2037 Male, age 80, right hemisphere 0.6
2287 Male, age 75, right hemisphere 0.5
2778 Female, age 91, both hemispheres 0.4
Nucleus accumbens
nTPM: 0.7
1856 Female, age 91, right hemisphere 0.9
1806 Female, age 85, left hemisphere 0.8
2824 Male, age 61, right hemisphere 0.8
1783 Male, age 74, unknown 0.7
2698 Female, age 72, unknown 0.7
2732 Male, age 80, right hemisphere 0.7
2286 Male, age 75, left hemisphere 0.5
2391 Female, age 94, left hemisphere 0.5
Nucleus basalis of Meynert
nTPM: 0.7
2569 Male, age 61, both hemispheres 0.8
2821 Male, age 75, both hemispheres 0.8
2393 Male, age 80, right hemisphere 0.6
2484 Female, age 94, left hemisphere 0.6
Nucleus of the diagonal band
nTPM: 0.6
1979 Male, age 74, unknown 0.9
2775 Male, age 80, right hemisphere 0.7
2029 Male, age 61, right hemisphere 0.6
2195 Female, age 85, both hemispheres 0.5
1812 Female, age 91, both hemispheres 0.3
Olfactory tubercle
nTPM: 0.6
2856 Male, age 75, right hemisphere 0.7
2487 Female, age 94, left hemisphere 0.6
1846 Male, age 80, right hemisphere 0.5
1998 Female, age 91, both hemispheres 0.5
Putamen
nTPM: 0.7
2489 Female, age 72, unknown 0.8
1838 Male, age 80, right hemisphere 0.7
1937 Female, age 91, right hemisphere 0.7
2482 Female, age 94, left hemisphere 0.7
2647 Male, age 75, left hemisphere 0.6
1829 Male, age 74, unknown 0.5
2466 Female, age 79, unknown 0.5
Septal nuclei
nTPM: 0.7
2199 Male, age 80, right hemisphere 1.0
2009 Female, age 91, both hemispheres 0.7
1960 Male, age 74, unknown 0.6
2031 Female, age 72, unknown 0.6
2059 Female, age 85, both hemispheres 0.6
2394 Male, age 61, left hemisphere 0.6
2629 Female, age 94, right hemisphere 0.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.0
Samples: 246

Max nTPM: 4.7
Min nTPM: 0.0
Std nTPM: 0.5
Median nTPM: 0.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 4.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 3.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 3.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 2.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 2.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 2.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 2.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 2.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.3
Samples: 246

Max nTPM: 5.6
Min nTPM: 0.1
Std nTPM: 0.7
Median nTPM: 1.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 5.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 4.5
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 4.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 3.5
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 3.2
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 3.1
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 3.1
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 3.0
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 2.9
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 2.8
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 2.8
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Brain - Putamen (basal ganglia)
Average nTPM: 0.9
Samples: 205

Max nTPM: 3.1
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 3.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 2.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 2.1
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 2.0
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 1.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 1.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 1.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 1.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 1.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 1.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.4
FF:10164-103B2 76 years, female 0.4
Globus pallidus
Scaled Tags Per Million: 1.4
FF:10175-103C4 60 years, female 1.5
FF:10161-103A8 76 years, female 1.2
Nucleus accumbens
Scaled Tags Per Million: 0.2
FF:10037-101F1 23-56 years, mixed 0.2
Putamen
Scaled Tags Per Million: 0.4
FF:10176-103C5 60 years, female 0.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.8
Pig sample Sample description nTPM
Caudate
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.9
Sample C Male 0.6
Sample D Male 0.6
Putamen
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Female 0.5
Sample B Female 0.3
Sample C Male 0.7
Sample D Male 0.5
Septum
nTPM: 0.8
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 0.6
Sample C Male 1.3
Sample D Male 0.6
Ventral pallidum
nTPM: 0.7
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.7
Sample C Male 1.0
Sample D Male 0.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 11.5
Samples: 4

Max nTPM: 15.8
Min nTPM: 7.8
Sample A Male 12.0
Sample B Male 15.8
Sample C Female 7.8
Sample D Female 10.5
Septum
nTPM: 11.1
Samples: 4

Max nTPM: 12.6
Min nTPM: 10.2
Sample A Male 11.0
Sample B Male 10.2
Sample C Female 12.6
Sample D Female 10.6
Ventral forebrain
nTPM: 10.6
Samples: 4

Max nTPM: 12.6
Min nTPM: 8.2
Sample A Male 12.6
Sample B Male 8.2
Sample C Female 11.9
Sample D Female 9.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
70528246 Antisense, RP_050623_02_B09, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
70528246 Antisense, RP_050623_02_B09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.