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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.2 nTPM
HPA:6.2 nTPM
GTEx:7.5 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:16.4 nTPM
Mouse:9.8 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.7
2290 Female, age 72, unknown 6.3
1857 Female, age 85, left hemisphere 6.2
2846 Female, age 79, unknown 6.2
2288 Male, age 75, left hemisphere 5.8
1781 Male, age 74, unknown 5.7
1854 Male, age 80, left hemisphere 5.6
2481 Female, age 94, left hemisphere 5.0
2289 Male, age 61, right hemisphere 4.7
Claustrum
nTPM: 5.4
2392 Female, age 94, both hemispheres 6.2
2491 Male, age 75, both hemispheres 5.8
2196 Female, age 79, unknown 5.7
1956 Male, age 74, unknown 5.5
2198 Male, age 80, both hemispheres 5.3
2284 Female, age 91, both hemispheres 5.2
2292 Female, age 85, both hemispheres 5.2
2568 Male, age 61, both hemispheres 5.0
2645 Female, age 72, unknown 5.0
Globus pallidus, externus
nTPM: 4.8
2395 Male, age 75, both hemispheres 5.7
1996 Male, age 80, right hemisphere 4.9
2772 Female, age 79, unknown 4.8
2646 Male, age 61, right hemisphere 4.4
2567 Female, age 72, unknown 4.3
Globus pallidus, internus
nTPM: 5.3
2287 Male, age 75, right hemisphere 6.4
2778 Female, age 91, both hemispheres 6.0
2111 Female, age 85, right hemisphere 5.8
1818 Male, age 74, unknown 5.0
2483 Female, age 94, right hemisphere 5.0
2037 Male, age 80, right hemisphere 4.7
2566 Female, age 72, unknown 4.4
Nucleus accumbens
nTPM: 6.2
1856 Female, age 91, right hemisphere 7.2
1806 Female, age 85, left hemisphere 6.6
1783 Male, age 74, unknown 6.3
2698 Female, age 72, unknown 6.3
2824 Male, age 61, right hemisphere 6.0
2391 Female, age 94, left hemisphere 5.9
2286 Male, age 75, left hemisphere 5.5
2732 Male, age 80, right hemisphere 5.5
Nucleus basalis of Meynert
nTPM: 5.3
2393 Male, age 80, right hemisphere 6.0
2484 Female, age 94, left hemisphere 5.4
2821 Male, age 75, both hemispheres 5.4
2569 Male, age 61, both hemispheres 4.4
Nucleus of the diagonal band
nTPM: 5.5
1979 Male, age 74, unknown 6.0
1812 Female, age 91, both hemispheres 5.6
2195 Female, age 85, both hemispheres 5.6
2775 Male, age 80, right hemisphere 5.2
2029 Male, age 61, right hemisphere 5.1
Olfactory tubercle
nTPM: 5.6
2487 Female, age 94, left hemisphere 6.0
1846 Male, age 80, right hemisphere 5.7
2856 Male, age 75, right hemisphere 5.5
1998 Female, age 91, both hemispheres 5.3
Putamen
nTPM: 5.5
1838 Male, age 80, right hemisphere 6.5
1829 Male, age 74, unknown 6.1
1937 Female, age 91, right hemisphere 6.0
2466 Female, age 79, unknown 5.8
2482 Female, age 94, left hemisphere 5.0
2489 Female, age 72, unknown 4.9
2647 Male, age 75, left hemisphere 4.6
Septal nuclei
nTPM: 5.4
2394 Male, age 61, left hemisphere 5.9
2031 Female, age 72, unknown 5.8
2009 Female, age 91, both hemispheres 5.4
2059 Female, age 85, both hemispheres 5.3
2199 Male, age 80, right hemisphere 5.3
1960 Male, age 74, unknown 5.1
2629 Female, age 94, right hemisphere 5.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.3
Samples: 246

Max nTPM: 13.4
Min nTPM: 3.0
Std nTPM: 1.4
Median nTPM: 6.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 13.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 11.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 10.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 10.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 10.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 9.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 9.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 9.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 9.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 9.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 9.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.5
Samples: 246

Max nTPM: 16.0
Min nTPM: 3.6
Std nTPM: 2.0
Median nTPM: 7.3
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 16.0
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 14.5
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 14.5
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 13.7
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 13.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 12.9
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 12.5
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 11.7
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 11.3
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 11.2
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 11.2
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Brain - Putamen (basal ganglia)
Average nTPM: 6.3
Samples: 205

Max nTPM: 15.7
Min nTPM: 3.1
Std nTPM: 1.6
Median nTPM: 6.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 15.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 13.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 13.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 12.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 10.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 10.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 10.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 9.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 9.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 9.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 9.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.3
FF:10164-103B2 76 years, female 18.3
Globus pallidus
Scaled Tags Per Million: 15.8
FF:10175-103C4 60 years, female 20.5
FF:10161-103A8 76 years, female 11.2
Nucleus accumbens
Scaled Tags Per Million: 14.9
FF:10037-101F1 23-56 years, mixed 14.9
Putamen
Scaled Tags Per Million: 26.1
FF:10176-103C5 60 years, female 26.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.4
Pig sample Sample description nTPM
Caudate
nTPM: 15.5
Samples: 4

Max nTPM: 17.3
Min nTPM: 13.9
Sample A Female 17.3
Sample B Female 14.7
Sample C Male 13.9
Sample D Male 16.1
Putamen
nTPM: 15.0
Samples: 4

Max nTPM: 16.2
Min nTPM: 14.0
Sample A Female 14.0
Sample B Female 16.2
Sample C Male 15.8
Sample D Male 14.1
Septum
nTPM: 16.4
Samples: 4

Max nTPM: 18.3
Min nTPM: 13.9
Sample A Female 18.3
Sample B Female 17.1
Sample C Male 13.9
Sample D Male 16.4
Ventral pallidum
nTPM: 16.2
Samples: 4

Max nTPM: 21.3
Min nTPM: 12.6
Sample A Female 21.3
Sample B Female 15.2
Sample C Male 12.6
Sample D Male 15.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 9.8
Samples: 4

Max nTPM: 10.7
Min nTPM: 8.9
Sample A Male 10.7
Sample B Male 8.9
Sample C Female 10.2
Sample D Female 9.3
Septum
nTPM: 8.7
Samples: 4

Max nTPM: 10.4
Min nTPM: 7.3
Sample A Male 8.8
Sample B Male 10.4
Sample C Female 7.3
Sample D Female 8.4
Ventral forebrain
nTPM: 9.6
Samples: 4

Max nTPM: 10.5
Min nTPM: 8.9
Sample A Male 10.5
Sample B Male 9.3
Sample C Female 8.9
Sample D Female 9.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
1510 Antisense, RP_Baylor_102913, Mouse strain C57BL/6J (56 days, male) 0.3
1511 Antisense, RP_Baylor_102913, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
1511 Antisense, RP_Baylor_102913, Mouse strain C57BL/6J (56 days, male) 0.2
1510 Antisense, RP_Baylor_102913, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.