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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:139.0 nTPM
HPA:139.0 nTPM
GTEx:123.4 nTPM
FANTOM5:100.4 Scaled Tags Per Million
Pig:32.4 nTPM
Mouse:121.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 139.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 130.2
1827 Male, age 72, unknown 134.1
1870 Female, age 42, unknown 133.9
1833 Male, age 53, unknown 131.4
2828 Female, age 72, unknown 131.4
2411 Female, age 72, unknown 131.1
2019 Male, age 18, unknown 130.1
2219 Male, age 76, both hemispheres 128.0
2586 Male, age 75, left hemisphere 127.8
2666 Male, age 74, left hemisphere 127.5
1830 Male, age 51, unknown 127.2
Dorsal raphe nucleus
nTPM: 139.0
2298 Female, age 72, unknown 149.6
1828 Male, age 53, unknown 138.6
2016 Female, age 72, unknown 138.2
2047 Male, age 72, unknown 136.1
2750 Male, age 76, both hemispheres 132.4
Inferior colliculus
nTPM: 134.4
2097 Female, age 72, unknown 135.9
1848 Female, age 42, unknown 134.1
1890 Male, age 53, unknown 133.9
2849 Male, age 72, unknown 133.7
Median raphe nucleus
nTPM: 136.5
2220 Male, age 76, midline 136.5
Pedunculopontine tegmental nucleus
nTPM: 135.2
2338 Male, age 61, both hemispheres 136.3
2334 Male, age 80, both hemispheres 135.9
1921 Female, age 85, both hemispheres 133.3
Periaquaductal grey, anterior
nTPM: 133.3
1795 Male, age 51, unknown 133.8
1947 Male, age 18, unknown 133.6
2502 Female, age 75, unknown 132.5
Periaquaductal grey, dorsal
nTPM: 138.4
2850 Male, age 76, both hemispheres 147.5
1840 Male, age 53, unknown 139.6
1831 Male, age 72, unknown 134.3
2464 Female, age 72, unknown 132.1
Periaquaductal grey, lateral
nTPM: 138.6
2272 Male, age 74, both hemispheres 143.4
2140 Male, age 76, both hemispheres 136.7
2053 Male, age 18, unknown 135.8
Pretectal area
nTPM: 134.8
2273 Male, age 74, both hemispheres 142.9
2224 Female, age 72, unknown 140.2
1817 Female, age 42, unknown 139.2
2667 Female, age 75, unknown 138.4
2825 Male, age 18, unknown 136.3
1944 Female, age 72, unknown 133.8
1815 Male, age 53, unknown 133.3
1816 Male, age 51, unknown 133.2
2007 Male, age 72, unknown 131.9
2316 Male, age 76, right hemisphere 128.4
2407 Male, age 75, both hemispheres 124.8
Red nucleus
nTPM: 132.0
1821 Female, age 72, unknown 140.6
2503 Female, age 72, unknown 135.0
2725 Female, age 75, unknown 134.2
1865 Male, age 51, unknown 132.9
2823 Male, age 76, right hemisphere 132.9
2227 Male, age 72, unknown 132.4
1954 Female, age 42, unknown 132.2
1904 Male, age 53, unknown 132.0
2769 Male, age 72, unknown 131.8
2588 Male, age 74, left hemisphere 128.8
2785 Male, age 18, unknown 127.9
2584 Male, age 75, left hemisphere 123.4
Substantia nigra
nTPM: 137.1
2699 Male, age 18, unknown 143.1
1916 Female, age 42, unknown 142.6
1851 Male, age 51, unknown 142.3
2241 Male, age 72, unknown 141.2
2409 Female, age 72, unknown 137.4
1889 Female, age 72, unknown 137.0
1941 Male, age 53, unknown 135.8
2665 Male, age 74, both hemispheres 133.6
2590 Female, age 75, unknown 132.5
2583 Male, age 75, right hemisphere 125.2
Superior colliculus
nTPM: 132.2
2587 Male, age 74, left hemisphere 138.1
1796 Male, age 53, unknown 134.2
1895 Male, age 76, right hemisphere 133.4
1995 Male, age 72, unknown 131.8
1839 Male, age 51, unknown 131.7
1913 Female, age 42, unknown 131.5
2261 Male, age 18, unknown 131.4
2668 Female, age 75, unknown 130.6
2087 Female, age 72, unknown 130.0
2664 Male, age 75, both hemispheres 129.2
Ventral tegmental area
nTPM: 135.6
1915 Female, age 42, unknown 142.0
2218 Male, age 76, both hemispheres 137.1
2410 Female, age 72, unknown 134.7
1942 Male, age 51, unknown 133.9
2223 Female, age 72, unknown 133.6
2021 Male, age 53, unknown 132.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 123.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 123.4
Samples: 139

Max nTPM: 221.8
Min nTPM: 64.4
Std nTPM: 23.9
Median nTPM: 120.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 221.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 182.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 177.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 175.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 174.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 169.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 168.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 165.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 165.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 164.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 163.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 100.4
FF:10158-103A5 76 years, female 100.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.4
Pig sample Sample description nTPM
Midbrain
nTPM: 32.3
Samples: 4

Max nTPM: 35.6
Min nTPM: 30.1
Sample A Female 35.6
Sample B Female 32.0
Sample C Male 31.6
Sample D Male 30.1
Periaqueductal gray
nTPM: 27.7
Samples: 3

Max nTPM: 29.8
Min nTPM: 26.3
Sample B Female 26.9
Sample C Male 29.8
Sample D Male 26.3
Substantia nigra
nTPM: 30.3
Samples: 4

Max nTPM: 36.2
Min nTPM: 26.0
Sample A Female 36.2
Sample B Female 27.8
Sample C Male 31.3
Sample D Male 26.0
Superior colliculi
nTPM: 32.4
Samples: 4

Max nTPM: 34.4
Min nTPM: 30.1
Sample A Female 34.4
Sample B Female 30.1
Sample C Male 34.2
Sample D Male 30.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 121.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 121.3
Samples: 4

Max nTPM: 128.6
Min nTPM: 112.6
Sample A Male 128.6
Sample B Male 117.9
Sample C Female 112.6
Sample D Female 126.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
1638 Antisense, RP_040604_01_C09, Mouse strain C57BL/6J (56 days, male) 0.6
1637 Antisense, RP_040604_01_C09, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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