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SNX27
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.7 nTPM
HPA:24.7 nTPM
GTEx:21.6 nTPM
FANTOM5:117.7 Scaled Tags Per Million
Pig:55.3 nTPM
Mouse:60.2 nTPM
Allen mouse:5.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 23.4
2846 Female, age 79, unknown 27.0
1857 Female, age 85, left hemisphere 26.2
2288 Male, age 75, left hemisphere 25.5
1854 Male, age 80, left hemisphere 25.2
2290 Female, age 72, unknown 25.1
2289 Male, age 61, right hemisphere 20.4
2481 Female, age 94, left hemisphere 19.1
1781 Male, age 74, unknown 19.0
Claustrum
nTPM: 17.2
2392 Female, age 94, both hemispheres 20.1
2491 Male, age 75, both hemispheres 18.4
1956 Male, age 74, unknown 18.1
2198 Male, age 80, both hemispheres 17.4
2568 Male, age 61, both hemispheres 17.1
2284 Female, age 91, both hemispheres 17.0
2196 Female, age 79, unknown 15.6
2292 Female, age 85, both hemispheres 15.5
2645 Female, age 72, unknown 15.5
Globus pallidus, externus
nTPM: 20.4
2772 Female, age 79, unknown 23.2
2395 Male, age 75, both hemispheres 22.8
2567 Female, age 72, unknown 20.0
1996 Male, age 80, right hemisphere 19.9
2646 Male, age 61, right hemisphere 15.9
Globus pallidus, internus
nTPM: 22.1
2287 Male, age 75, right hemisphere 25.6
1818 Male, age 74, unknown 24.9
2111 Female, age 85, right hemisphere 23.7
2483 Female, age 94, right hemisphere 21.1
2037 Male, age 80, right hemisphere 20.4
2778 Female, age 91, both hemispheres 19.7
2566 Female, age 72, unknown 19.3
Nucleus accumbens
nTPM: 22.0
2824 Male, age 61, right hemisphere 26.0
2286 Male, age 75, left hemisphere 23.8
1783 Male, age 74, unknown 23.6
1806 Female, age 85, left hemisphere 23.5
1856 Female, age 91, right hemisphere 23.3
2698 Female, age 72, unknown 21.5
2391 Female, age 94, left hemisphere 18.1
2732 Male, age 80, right hemisphere 15.9
Nucleus basalis of Meynert
nTPM: 20.5
2393 Male, age 80, right hemisphere 26.0
2484 Female, age 94, left hemisphere 20.5
2821 Male, age 75, both hemispheres 18.6
2569 Male, age 61, both hemispheres 17.0
Nucleus of the diagonal band
nTPM: 16.8
1812 Female, age 91, both hemispheres 18.5
2029 Male, age 61, right hemisphere 18.4
2775 Male, age 80, right hemisphere 18.0
1979 Male, age 74, unknown 14.6
2195 Female, age 85, both hemispheres 14.6
Olfactory tubercle
nTPM: 16.0
1998 Female, age 91, both hemispheres 16.8
2487 Female, age 94, left hemisphere 16.1
2856 Male, age 75, right hemisphere 15.7
1846 Male, age 80, right hemisphere 15.4
Putamen
nTPM: 24.7
1838 Male, age 80, right hemisphere 28.2
1829 Male, age 74, unknown 27.8
2466 Female, age 79, unknown 25.8
1937 Female, age 91, right hemisphere 24.1
2489 Female, age 72, unknown 23.8
2647 Male, age 75, left hemisphere 22.3
2482 Female, age 94, left hemisphere 20.6
Septal nuclei
nTPM: 15.2
2394 Male, age 61, left hemisphere 16.6
2031 Female, age 72, unknown 16.0
2629 Female, age 94, right hemisphere 15.9
1960 Male, age 74, unknown 15.5
2009 Female, age 91, both hemispheres 15.4
2059 Female, age 85, both hemispheres 14.1
2199 Male, age 80, right hemisphere 13.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.4
Samples: 246

Max nTPM: 31.2
Min nTPM: 9.9
Std nTPM: 3.8
Median nTPM: 21.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 31.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 29.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 29.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 29.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 28.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 28.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 28.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 28.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 27.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 27.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 27.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.4
Samples: 246

Max nTPM: 31.4
Min nTPM: 8.6
Std nTPM: 3.6
Median nTPM: 20.5
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 31.4
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 28.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 28.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 28.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 27.5
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 27.1
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 27.0
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 26.5
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 26.4
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 26.2
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 25.9
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Brain - Putamen (basal ganglia)
Average nTPM: 21.6
Samples: 205

Max nTPM: 32.8
Min nTPM: 12.8
Std nTPM: 3.8
Median nTPM: 21.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 32.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 29.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 29.0
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 28.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 28.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 28.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 28.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 28.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 27.7
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 27.4
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 27.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 109.1
FF:10164-103B2 76 years, female 109.1
Globus pallidus
Scaled Tags Per Million: 90.5
FF:10161-103A8 76 years, female 91.9
FF:10175-103C4 60 years, female 89.1
Nucleus accumbens
Scaled Tags Per Million: 109.6
FF:10037-101F1 23-56 years, mixed 109.6
Putamen
Scaled Tags Per Million: 117.7
FF:10176-103C5 60 years, female 117.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 55.3
Pig sample Sample description nTPM
Caudate
nTPM: 41.2
Samples: 4

Max nTPM: 46.6
Min nTPM: 37.4
Sample A Female 37.9
Sample B Female 37.4
Sample C Male 46.6
Sample D Male 42.8
Putamen
nTPM: 55.3
Samples: 4

Max nTPM: 66.4
Min nTPM: 43.4
Sample A Female 57.6
Sample B Female 43.4
Sample C Male 66.4
Sample D Male 53.7
Septum
nTPM: 46.2
Samples: 4

Max nTPM: 49.5
Min nTPM: 42.1
Sample A Female 48.5
Sample B Female 42.1
Sample C Male 49.5
Sample D Male 44.8
Ventral pallidum
nTPM: 47.4
Samples: 4

Max nTPM: 47.8
Min nTPM: 46.8
Sample A Female 46.8
Sample B Female 47.6
Sample C Male 47.8
Sample D Male 47.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 60.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 60.2
Samples: 4

Max nTPM: 62.1
Min nTPM: 57.4
Sample A Male 59.4
Sample B Male 57.4
Sample C Female 62.0
Sample D Female 62.1
Septum
nTPM: 53.0
Samples: 4

Max nTPM: 56.6
Min nTPM: 50.4
Sample A Male 51.8
Sample B Male 53.0
Sample C Female 50.4
Sample D Female 56.6
Ventral forebrain
nTPM: 52.3
Samples: 4

Max nTPM: 54.2
Min nTPM: 50.1
Sample A Male 51.1
Sample B Male 53.9
Sample C Female 50.1
Sample D Female 54.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.1
72002038 Antisense, RP_050915_02_F05, Mouse strain C57BL/6J (56 days, male) 6.9
70812954 Antisense, RP_050712_02_H05, Mouse strain C57BL/6J (56 days, male) 3.4
Pallidum
Expression energy: 4.2
72002038 Antisense, RP_050915_02_F05, Mouse strain C57BL/6J (56 days, male) 5.6
70812954 Antisense, RP_050712_02_H05, Mouse strain C57BL/6J (56 days, male) 2.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.