ABOUTMENU
HELP
NEWS
RFX5
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni
Consensus:12.3 nTPM
HPA:12.3 nTPM
GTEx:11.9 nTPM
FANTOM5:9.8 Scaled Tags Per Million
Pig:8.1 nTPM
Mouse:6.8 nTPM
Allen mouse:1.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018519
Glial cells High
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.3
Sample id Sample description nTPM
Hippocampus
nTPM: 11.9
2148 Female, age 91, left hemisphere 12.7
2529 Female, age 94, left hemisphere 12.5
1898 Male, age 80, left hemisphere 12.4
2621 Female, age 67, right hemisphere 11.4
1855 Male, age 76, left hemisphere 11.1
1911 Female, age 85, right hemisphere 11.1
Dentate gyrus
nTPM: 11.1
1927 Female, age 91, both hemispheres 12.7
2528 Male, age 74, both hemispheres 11.6
2246 Female, age 85, both hemispheres 11.4
2530 Female, age 94, left hemisphere 11.2
2531 Female, age 67, both hemispheres 9.9
2010 Male, age 76, both hemispheres 9.7
Entorhinal gyrus
nTPM: 10.7
2117 Female, age 91, right hemisphere 12.1
2686 Male, age 75, right hemisphere 11.4
1787 Male, age 76, left hemisphere 10.8
2764 Male, age 80, right hemisphere 10.7
1938 Female, age 85, left hemisphere 9.8
2613 Female, age 94, left hemisphere 9.6
Hippocampus, CA1
nTPM: 11.7
2527 Male, age 74, both hemispheres 13.5
1873 Female, age 85, both hemispheres 12.6
2082 Female, age 91, right hemisphere 11.4
2749 Male, age 80, left hemisphere 11.3
2045 Male, age 76, both hemispheres 9.8
Hippocampus, CA2
nTPM: 12.3
1963 Male, age 80, left hemisphere 12.9
2437 Female, age 94, left hemisphere 12.8
1892 Male, age 76, both hemispheres 12.7
2113 Female, age 91, right hemisphere 12.3
1940 Female, age 85, left hemisphere 11.7
2249 Male, age 74, both hemispheres 11.6
Hippocampus, CA3
nTPM: 11.4
2861 Female, age 67, both hemispheres 12.9
2436 Male, age 74, both hemispheres 12.1
1867 Male, age 76, both hemispheres 11.1
1891 Female, age 85, both hemispheres 10.9
2137 Male, age 80, left hemisphere 10.7
2620 Female, age 94, left hemisphere 10.6
Parahippocampal cortex
nTPM: 10.7
2622 Female, age 67, right hemisphere 11.9
2692 Male, age 74, both hemispheres 11.9
2245 Female, age 91, both hemispheres 11.1
2532 Female, age 72, left hemisphere 11.0
2250 Female, age 67, right hemisphere 10.6
1850 Male, age 80, both hemispheres 10.5
1933 Female, age 85, both hemispheres 10.4
2693 Female, age 94, both hemispheres 10.2
1990 Female, age 91, right hemisphere 10.0
2018 Male, age 76, both hemispheres 9.7
Perirhinal gyrus
nTPM: 11.4
1794 Male, age 80, right hemisphere 12.6
1847 Female, age 91, left hemisphere 11.9
2521 Female, age 94, right hemisphere 11.3
1841 Female, age 85, right hemisphere 10.8
2848 Male, age 76, right hemisphere 10.4
Subiculum
nTPM: 11.5
2729 Female, age 91, right hemisphere 13.7
2438 Female, age 94, left hemisphere 13.6
2619 Male, age 74, both hemispheres 12.6
1901 Male, age 80, both hemispheres 10.2
1977 Female, age 85, both hemispheres 9.9
2042 Male, age 76, both hemispheres 9.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.9
Samples: 197

Max nTPM: 21.7
Min nTPM: 5.7
Std nTPM: 2.4
Median nTPM: 11.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 21.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 21.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 21.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 19.6
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 19.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 18.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 17.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 17.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 17.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 16.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 16.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 9.8
FF:10153-102I9 76 years, female 13.5
FF:10169-103B7 60 years, female 6.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.9
Samples: 4

Max nTPM: 8.7
Min nTPM: 7.1
Sample A Female 8.7
Sample B Female 7.6
Sample C Male 8.2
Sample D Male 7.1
Entorhinal cortex
nTPM: 7.2
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.6
Sample A Female 7.7
Sample B Female 7.8
Sample C Male 6.7
Sample D Male 6.6
Subiculum
nTPM: 7.5
Samples: 4

Max nTPM: 8.7
Min nTPM: 6.8
Sample A Female 8.7
Sample B Female 7.0
Sample C Male 7.5
Sample D Male 6.8
Ventral hippocampus
nTPM: 8.1
Samples: 4

Max nTPM: 9.1
Min nTPM: 6.7
Sample A Female 7.9
Sample B Female 6.7
Sample C Male 9.1
Sample D Male 8.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 6.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.8
Samples: 4

Max nTPM: 7.0
Min nTPM: 4.4
Sample A Male 4.4
Sample B Male 7.0
Sample C Female 4.9
Sample D Female 6.8
Hippocampal formation
nTPM: 6.8
Samples: 4

Max nTPM: 8.9
Min nTPM: 5.7
Sample A Male 5.7
Sample B Male 8.9
Sample C Female 6.3
Sample D Female 6.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.7
70813125 Antisense, RP_050712_03_C02, Mouse strain C57BL/6J (56 days, male) 2.8
71325408 Antisense, RP_050825_02_G10, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.