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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:168.5 nTPM
HPA:168.5 nTPM
GTEx:137.7 nTPM
FANTOM5:214.7 Scaled Tags Per Million
Pig:135.4 nTPM
Mouse:126.8 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 168.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 149.0
1870 Female, age 42, unknown 174.2
1830 Male, age 51, unknown 172.1
2019 Male, age 18, unknown 169.3
2411 Female, age 72, unknown 165.1
1833 Male, age 53, unknown 162.4
2828 Female, age 72, unknown 143.7
2586 Male, age 75, left hemisphere 127.9
2666 Male, age 74, left hemisphere 126.8
1827 Male, age 72, unknown 126.6
2219 Male, age 76, both hemispheres 122.2
Dorsal raphe nucleus
nTPM: 135.4
2750 Male, age 76, both hemispheres 169.2
2016 Female, age 72, unknown 133.9
1828 Male, age 53, unknown 132.5
2298 Female, age 72, unknown 123.1
2047 Male, age 72, unknown 118.2
Inferior colliculus
nTPM: 127.6
1848 Female, age 42, unknown 132.3
1890 Male, age 53, unknown 129.5
2097 Female, age 72, unknown 124.5
2849 Male, age 72, unknown 124.0
Median raphe nucleus
nTPM: 127.4
2220 Male, age 76, midline 127.4
Pedunculopontine tegmental nucleus
nTPM: 142.2
2338 Male, age 61, both hemispheres 152.8
2334 Male, age 80, both hemispheres 144.3
1921 Female, age 85, both hemispheres 129.4
Periaquaductal grey, anterior
nTPM: 124.7
2502 Female, age 75, unknown 132.9
1947 Male, age 18, unknown 126.2
1795 Male, age 51, unknown 115.1
Periaquaductal grey, dorsal
nTPM: 122.1
2464 Female, age 72, unknown 132.0
2850 Male, age 76, both hemispheres 126.0
1831 Male, age 72, unknown 124.6
1840 Male, age 53, unknown 105.6
Periaquaductal grey, lateral
nTPM: 128.0
2272 Male, age 74, both hemispheres 133.0
2053 Male, age 18, unknown 129.1
2140 Male, age 76, both hemispheres 121.9
Pretectal area
nTPM: 127.1
1815 Male, age 53, unknown 142.5
2316 Male, age 76, right hemisphere 142.1
2273 Male, age 74, both hemispheres 134.0
2407 Male, age 75, both hemispheres 131.6
2667 Female, age 75, unknown 130.6
1817 Female, age 42, unknown 128.9
2825 Male, age 18, unknown 126.9
2007 Male, age 72, unknown 123.7
2224 Female, age 72, unknown 122.2
1944 Female, age 72, unknown 109.8
1816 Male, age 51, unknown 106.1
Red nucleus
nTPM: 168.5
1904 Male, age 53, unknown 193.1
1865 Male, age 51, unknown 192.7
1821 Female, age 72, unknown 189.3
2227 Male, age 72, unknown 175.2
1954 Female, age 42, unknown 174.9
2785 Male, age 18, unknown 173.8
2769 Male, age 72, unknown 173.4
2823 Male, age 76, right hemisphere 169.7
2503 Female, age 72, unknown 154.2
2588 Male, age 74, left hemisphere 145.4
2725 Female, age 75, unknown 140.6
2584 Male, age 75, left hemisphere 139.3
Substantia nigra
nTPM: 130.7
1851 Male, age 51, unknown 141.7
2590 Female, age 75, unknown 139.2
2409 Female, age 72, unknown 136.0
2583 Male, age 75, right hemisphere 135.8
1889 Female, age 72, unknown 133.2
2241 Male, age 72, unknown 130.3
2699 Male, age 18, unknown 128.8
1941 Male, age 53, unknown 125.2
1916 Female, age 42, unknown 119.0
2665 Male, age 74, both hemispheres 117.4
Superior colliculus
nTPM: 137.2
1913 Female, age 42, unknown 171.1
1995 Male, age 72, unknown 170.9
2587 Male, age 74, left hemisphere 145.9
1895 Male, age 76, right hemisphere 141.7
1839 Male, age 51, unknown 139.1
2668 Female, age 75, unknown 129.9
1796 Male, age 53, unknown 123.9
2664 Male, age 75, both hemispheres 119.2
2087 Female, age 72, unknown 116.7
2261 Male, age 18, unknown 113.9
Ventral tegmental area
nTPM: 143.8
2223 Female, age 72, unknown 175.6
2410 Female, age 72, unknown 154.7
2021 Male, age 53, unknown 137.0
1942 Male, age 51, unknown 134.0
2218 Male, age 76, both hemispheres 132.8
1915 Female, age 42, unknown 128.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 137.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 137.7
Samples: 139

Max nTPM: 370.1
Min nTPM: 53.4
Std nTPM: 56.4
Median nTPM: 123.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 370.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 344.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 318.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 293.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 275.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 268.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 268.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 258.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 253.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 250.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 218.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 214.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 214.7
FF:10158-103A5 76 years, female 214.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 135.4
Pig sample Sample description nTPM
Midbrain
nTPM: 135.4
Samples: 4

Max nTPM: 318.0
Min nTPM: 58.4
Sample A Female 318.0
Sample B Female 106.2
Sample C Male 58.4
Sample D Male 59.1
Periaqueductal gray
nTPM: 74.4
Samples: 3

Max nTPM: 90.0
Min nTPM: 56.2
Sample B Female 90.0
Sample C Male 56.2
Sample D Male 76.9
Substantia nigra
nTPM: 120.5
Samples: 4

Max nTPM: 194.7
Min nTPM: 82.3
Sample A Female 120.5
Sample B Female 84.6
Sample C Male 82.3
Sample D Male 194.7
Superior colliculi
nTPM: 97.8
Samples: 4

Max nTPM: 114.9
Min nTPM: 72.6
Sample A Female 114.9
Sample B Female 72.6
Sample C Male 94.8
Sample D Male 108.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 126.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 126.8
Samples: 4

Max nTPM: 141.8
Min nTPM: 112.8
Sample A Male 123.8
Sample B Male 112.8
Sample C Female 141.8
Sample D Female 128.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
68196984 Antisense, RP_041018_01_A02, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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