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TPM3
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:104.8 nTPM
HPA:104.8 nTPM
GTEx:113.8 nTPM
FANTOM5:57.7 Scaled Tags Per Million
Pig:130.4 nTPM
Mouse:146.7 nTPM
Allen mouse:19.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000261Antibody HPA009066Antibody HPA047089Antibody HPA053624
Glial cells LowNot detectedLowNot detected
Neuronal cells Not detectedNot detectedMediumHigh








HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 104.8
Sample id Sample description nTPM
Hippocampus
nTPM: 88.7
1898 Male, age 80, left hemisphere 97.6
1855 Male, age 76, left hemisphere 94.2
2621 Female, age 67, right hemisphere 92.0
2529 Female, age 94, left hemisphere 84.5
1911 Female, age 85, right hemisphere 82.5
2148 Female, age 91, left hemisphere 81.7
Dentate gyrus
nTPM: 87.7
2246 Female, age 85, both hemispheres 94.2
2530 Female, age 94, left hemisphere 94.1
2010 Male, age 76, both hemispheres 91.0
2531 Female, age 67, both hemispheres 86.8
1927 Female, age 91, both hemispheres 84.3
2528 Male, age 74, both hemispheres 75.9
Entorhinal gyrus
nTPM: 94.9
1938 Female, age 85, left hemisphere 104.9
2764 Male, age 80, right hemisphere 97.8
2613 Female, age 94, left hemisphere 95.2
1787 Male, age 76, left hemisphere 94.8
2686 Male, age 75, right hemisphere 94.1
2117 Female, age 91, right hemisphere 82.6
Hippocampus, CA1
nTPM: 87.8
2045 Male, age 76, both hemispheres 93.7
2749 Male, age 80, left hemisphere 91.2
1873 Female, age 85, both hemispheres 88.5
2082 Female, age 91, right hemisphere 83.5
2527 Male, age 74, both hemispheres 82.2
Hippocampus, CA2
nTPM: 88.1
1892 Male, age 76, both hemispheres 99.1
1940 Female, age 85, left hemisphere 92.2
2437 Female, age 94, left hemisphere 87.2
1963 Male, age 80, left hemisphere 86.5
2113 Female, age 91, right hemisphere 84.4
2249 Male, age 74, both hemispheres 79.2
Hippocampus, CA3
nTPM: 86.5
1867 Male, age 76, both hemispheres 93.6
2137 Male, age 80, left hemisphere 90.8
2861 Female, age 67, both hemispheres 87.7
1891 Female, age 85, both hemispheres 84.5
2620 Female, age 94, left hemisphere 83.9
2436 Male, age 74, both hemispheres 78.4
Parahippocampal cortex
nTPM: 95.8
2532 Female, age 72, left hemisphere 108.7
1850 Male, age 80, both hemispheres 108.6
2245 Female, age 91, both hemispheres 101.5
1933 Female, age 85, both hemispheres 98.9
2693 Female, age 94, both hemispheres 92.9
2250 Female, age 67, right hemisphere 92.7
2622 Female, age 67, right hemisphere 90.5
1990 Female, age 91, right hemisphere 90.4
2018 Male, age 76, both hemispheres 89.5
2692 Male, age 74, both hemispheres 84.7
Perirhinal gyrus
nTPM: 104.8
2848 Male, age 76, right hemisphere 107.6
1794 Male, age 80, right hemisphere 106.9
1847 Female, age 91, left hemisphere 106.0
1841 Female, age 85, right hemisphere 103.8
2521 Female, age 94, right hemisphere 99.8
Subiculum
nTPM: 86.4
1977 Female, age 85, both hemispheres 96.8
2438 Female, age 94, left hemisphere 90.1
1901 Male, age 80, both hemispheres 87.0
2042 Male, age 76, both hemispheres 87.0
2619 Male, age 74, both hemispheres 79.7
2729 Female, age 91, right hemisphere 77.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 113.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 113.8
Samples: 197

Max nTPM: 320.6
Min nTPM: 50.9
Std nTPM: 39.4
Median nTPM: 104.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 320.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 266.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 240.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 237.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 220.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 203.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 201.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 200.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 190.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 188.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 188.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 57.7
FF:10169-103B7 60 years, female 64.8
FF:10153-102I9 76 years, female 50.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 130.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 130.4
Samples: 4

Max nTPM: 166.3
Min nTPM: 104.4
Sample A Female 166.3
Sample B Female 132.9
Sample C Male 118.1
Sample D Male 104.4
Entorhinal cortex
nTPM: 127.2
Samples: 4

Max nTPM: 138.9
Min nTPM: 110.5
Sample A Female 138.9
Sample B Female 134.4
Sample C Male 125.1
Sample D Male 110.5
Subiculum
nTPM: 115.8
Samples: 4

Max nTPM: 147.7
Min nTPM: 101.6
Sample A Female 147.7
Sample B Female 104.7
Sample C Male 101.6
Sample D Male 109.0
Ventral hippocampus
nTPM: 112.9
Samples: 4

Max nTPM: 141.8
Min nTPM: 83.5
Sample A Female 110.2
Sample B Female 83.5
Sample C Male 116.2
Sample D Male 141.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 146.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 146.7
Samples: 4

Max nTPM: 152.4
Min nTPM: 137.0
Sample A Male 137.0
Sample B Male 151.1
Sample C Female 146.4
Sample D Female 152.4
Hippocampal formation
nTPM: 141.6
Samples: 4

Max nTPM: 151.4
Min nTPM: 133.4
Sample A Male 151.4
Sample B Male 140.1
Sample C Female 141.4
Sample D Female 133.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 19.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 19.1
275873 Antisense, RP_040604_02_F06, Mouse strain C57BL/6J (56 days, male) 23.1
199223 Antisense, RP_040604_02_F06, Mouse strain C57BL/6J (56 days, male) 21.7
70919358 Antisense, RP_050713_01_B08, Mouse strain C57BL/6J (56 days, male) 15.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.