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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.3 nTPM
HPA:42.3 nTPM
GTEx:36.7 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:31.8 nTPM
Mouse:17.9 nTPM
Allen mouse:8.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.5
2411 Female, age 72, unknown 42.2
2019 Male, age 18, unknown 42.1
1870 Female, age 42, unknown 41.7
2586 Male, age 75, left hemisphere 41.0
2828 Female, age 72, unknown 40.9
1830 Male, age 51, unknown 40.4
1833 Male, age 53, unknown 40.2
1827 Male, age 72, unknown 39.9
2219 Male, age 76, both hemispheres 39.8
2666 Male, age 74, left hemisphere 36.7
Dorsal raphe nucleus
nTPM: 42.3
2298 Female, age 72, unknown 44.6
2016 Female, age 72, unknown 42.8
2047 Male, age 72, unknown 41.9
1828 Male, age 53, unknown 41.7
2750 Male, age 76, both hemispheres 40.8
Inferior colliculus
nTPM: 41.1
2097 Female, age 72, unknown 43.2
1848 Female, age 42, unknown 41.2
1890 Male, age 53, unknown 41.0
2849 Male, age 72, unknown 39.0
Median raphe nucleus
nTPM: 41.8
2220 Male, age 76, midline 41.8
Pedunculopontine tegmental nucleus
nTPM: 40.5
2334 Male, age 80, both hemispheres 41.5
1921 Female, age 85, both hemispheres 40.5
2338 Male, age 61, both hemispheres 39.6
Periaquaductal grey, anterior
nTPM: 40.7
2502 Female, age 75, unknown 41.4
1947 Male, age 18, unknown 40.4
1795 Male, age 51, unknown 40.3
Periaquaductal grey, dorsal
nTPM: 40.3
2464 Female, age 72, unknown 41.0
1840 Male, age 53, unknown 40.6
1831 Male, age 72, unknown 40.1
2850 Male, age 76, both hemispheres 39.4
Periaquaductal grey, lateral
nTPM: 40.6
2272 Male, age 74, both hemispheres 41.9
2053 Male, age 18, unknown 41.2
2140 Male, age 76, both hemispheres 38.8
Pretectal area
nTPM: 41.3
2273 Male, age 74, both hemispheres 43.8
1815 Male, age 53, unknown 42.0
2007 Male, age 72, unknown 41.8
1817 Female, age 42, unknown 41.6
2224 Female, age 72, unknown 41.4
2667 Female, age 75, unknown 41.1
1944 Female, age 72, unknown 40.9
1816 Male, age 51, unknown 40.7
2407 Male, age 75, both hemispheres 40.7
2316 Male, age 76, right hemisphere 40.5
2825 Male, age 18, unknown 39.8
Red nucleus
nTPM: 42.0
1821 Female, age 72, unknown 45.6
1865 Male, age 51, unknown 43.7
2769 Male, age 72, unknown 42.8
1904 Male, age 53, unknown 42.7
1954 Female, age 42, unknown 42.4
2227 Male, age 72, unknown 42.1
2503 Female, age 72, unknown 42.0
2823 Male, age 76, right hemisphere 41.8
2725 Female, age 75, unknown 41.3
2785 Male, age 18, unknown 41.3
2584 Male, age 75, left hemisphere 39.9
2588 Male, age 74, left hemisphere 38.7
Substantia nigra
nTPM: 41.9
2699 Male, age 18, unknown 43.0
1916 Female, age 42, unknown 42.8
1851 Male, age 51, unknown 42.6
2241 Male, age 72, unknown 42.4
2665 Male, age 74, both hemispheres 42.3
1941 Male, age 53, unknown 42.2
1889 Female, age 72, unknown 42.1
2583 Male, age 75, right hemisphere 42.1
2590 Female, age 75, unknown 41.8
2409 Female, age 72, unknown 37.5
Superior colliculus
nTPM: 40.7
2664 Male, age 75, both hemispheres 42.4
1995 Male, age 72, unknown 41.9
1895 Male, age 76, right hemisphere 41.7
2587 Male, age 74, left hemisphere 40.9
2668 Female, age 75, unknown 40.7
1913 Female, age 42, unknown 40.4
1796 Male, age 53, unknown 40.2
1839 Male, age 51, unknown 40.1
2261 Male, age 18, unknown 39.7
2087 Female, age 72, unknown 39.2
Ventral tegmental area
nTPM: 41.7
2410 Female, age 72, unknown 43.6
2218 Male, age 76, both hemispheres 42.6
1915 Female, age 42, unknown 41.2
2223 Female, age 72, unknown 41.2
1942 Male, age 51, unknown 41.1
2021 Male, age 53, unknown 40.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.7
Samples: 139

Max nTPM: 58.3
Min nTPM: 18.8
Std nTPM: 7.6
Median nTPM: 36.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 58.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 57.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 57.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 53.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 53.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 50.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 50.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 49.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 49.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 49.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 48.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.4
FF:10158-103A5 76 years, female 41.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.8
Pig sample Sample description nTPM
Midbrain
nTPM: 31.8
Samples: 4

Max nTPM: 50.9
Min nTPM: 21.4
Sample A Female 50.9
Sample B Female 31.0
Sample C Male 21.4
Sample D Male 23.8
Periaqueductal gray
nTPM: 26.7
Samples: 3

Max nTPM: 27.8
Min nTPM: 26.0
Sample B Female 26.4
Sample C Male 27.8
Sample D Male 26.0
Substantia nigra
nTPM: 30.5
Samples: 4

Max nTPM: 40.8
Min nTPM: 25.7
Sample A Female 40.8
Sample B Female 29.1
Sample C Male 26.3
Sample D Male 25.7
Superior colliculi
nTPM: 27.8
Samples: 4

Max nTPM: 34.7
Min nTPM: 24.2
Sample A Female 34.7
Sample B Female 24.2
Sample C Male 25.5
Sample D Male 26.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 20.0
Min nTPM: 15.3
Sample A Male 20.0
Sample B Male 18.1
Sample C Female 15.3
Sample D Female 18.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.2
69549659 Antisense, RP_050317_04_B12, Mouse strain C57BL/6J (56 days, male) 8.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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