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C1orf43
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:152.6 nTPM
HPA:152.6 nTPM
GTEx:175.8 nTPM
FANTOM5:171.9 Scaled Tags Per Million
Pig:25.6 nTPM
Mouse:51.8 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 152.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 146.4
2019 Male, age 18, unknown 153.6
2411 Female, age 72, unknown 150.9
1870 Female, age 42, unknown 150.2
1827 Male, age 72, unknown 149.2
2666 Male, age 74, left hemisphere 147.9
1833 Male, age 53, unknown 145.0
1830 Male, age 51, unknown 144.0
2586 Male, age 75, left hemisphere 143.7
2828 Female, age 72, unknown 142.9
2219 Male, age 76, both hemispheres 137.3
Dorsal raphe nucleus
nTPM: 145.5
2750 Male, age 76, both hemispheres 151.6
2298 Female, age 72, unknown 149.6
1828 Male, age 53, unknown 147.1
2047 Male, age 72, unknown 139.7
2016 Female, age 72, unknown 139.3
Inferior colliculus
nTPM: 145.0
2097 Female, age 72, unknown 154.5
1890 Male, age 53, unknown 148.2
1848 Female, age 42, unknown 141.0
2849 Male, age 72, unknown 136.3
Median raphe nucleus
nTPM: 145.4
2220 Male, age 76, midline 145.4
Pedunculopontine tegmental nucleus
nTPM: 145.8
2334 Male, age 80, both hemispheres 149.8
1921 Female, age 85, both hemispheres 144.5
2338 Male, age 61, both hemispheres 143.1
Periaquaductal grey, anterior
nTPM: 142.6
1947 Male, age 18, unknown 145.0
2502 Female, age 75, unknown 144.8
1795 Male, age 51, unknown 138.0
Periaquaductal grey, dorsal
nTPM: 137.7
1831 Male, age 72, unknown 139.3
1840 Male, age 53, unknown 138.3
2464 Female, age 72, unknown 137.9
2850 Male, age 76, both hemispheres 135.1
Periaquaductal grey, lateral
nTPM: 136.0
2053 Male, age 18, unknown 139.5
2140 Male, age 76, both hemispheres 135.1
2272 Male, age 74, both hemispheres 133.5
Pretectal area
nTPM: 145.9
1817 Female, age 42, unknown 157.2
2007 Male, age 72, unknown 157.0
1816 Male, age 51, unknown 154.8
1815 Male, age 53, unknown 154.4
1944 Female, age 72, unknown 151.4
2316 Male, age 76, right hemisphere 142.2
2667 Female, age 75, unknown 139.5
2224 Female, age 72, unknown 139.3
2825 Male, age 18, unknown 138.4
2273 Male, age 74, both hemispheres 136.6
2407 Male, age 75, both hemispheres 134.0
Red nucleus
nTPM: 152.6
1821 Female, age 72, unknown 169.2
2503 Female, age 72, unknown 158.1
1904 Male, age 53, unknown 158.0
1865 Male, age 51, unknown 156.3
1954 Female, age 42, unknown 152.9
2785 Male, age 18, unknown 152.4
2769 Male, age 72, unknown 151.5
2227 Male, age 72, unknown 150.8
2725 Female, age 75, unknown 148.5
2823 Male, age 76, right hemisphere 147.5
2588 Male, age 74, left hemisphere 147.1
2584 Male, age 75, left hemisphere 138.5
Substantia nigra
nTPM: 151.7
1916 Female, age 42, unknown 160.7
1851 Male, age 51, unknown 160.4
2241 Male, age 72, unknown 155.3
1889 Female, age 72, unknown 155.2
2409 Female, age 72, unknown 154.7
2590 Female, age 75, unknown 150.4
2665 Male, age 74, both hemispheres 149.6
2699 Male, age 18, unknown 144.7
2583 Male, age 75, right hemisphere 144.5
1941 Male, age 53, unknown 141.6
Superior colliculus
nTPM: 146.5
2668 Female, age 75, unknown 155.0
2587 Male, age 74, left hemisphere 149.6
1913 Female, age 42, unknown 148.7
1895 Male, age 76, right hemisphere 147.7
1796 Male, age 53, unknown 147.5
2087 Female, age 72, unknown 146.4
2261 Male, age 18, unknown 146.2
1995 Male, age 72, unknown 144.3
1839 Male, age 51, unknown 141.0
2664 Male, age 75, both hemispheres 138.7
Ventral tegmental area
nTPM: 147.5
2410 Female, age 72, unknown 157.5
1915 Female, age 42, unknown 152.4
2223 Female, age 72, unknown 151.7
2218 Male, age 76, both hemispheres 145.8
1942 Male, age 51, unknown 140.2
2021 Male, age 53, unknown 137.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 175.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 175.8
Samples: 139

Max nTPM: 257.8
Min nTPM: 125.6
Std nTPM: 27.5
Median nTPM: 173.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 257.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 254.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 246.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 244.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 241.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 241.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 236.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 234.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 228.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 226.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 225.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 171.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 171.9
FF:10158-103A5 76 years, female 171.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.6
Pig sample Sample description nTPM
Midbrain
nTPM: 23.4
Samples: 4

Max nTPM: 25.8
Min nTPM: 21.6
Sample A Female 25.8
Sample B Female 24.5
Sample C Male 21.6
Sample D Male 21.7
Periaqueductal gray
nTPM: 23.0
Samples: 3

Max nTPM: 26.0
Min nTPM: 20.8
Sample B Female 22.3
Sample C Male 26.0
Sample D Male 20.8
Substantia nigra
nTPM: 24.7
Samples: 4

Max nTPM: 29.6
Min nTPM: 18.9
Sample A Female 29.6
Sample B Female 23.9
Sample C Male 26.4
Sample D Male 18.9
Superior colliculi
nTPM: 25.6
Samples: 4

Max nTPM: 27.8
Min nTPM: 22.8
Sample A Female 27.8
Sample B Female 27.6
Sample C Male 22.8
Sample D Male 24.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.9
Samples: 4

Max nTPM: 55.5
Min nTPM: 47.4
Sample A Male 52.9
Sample B Male 51.6
Sample C Female 55.5
Sample D Female 47.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
69443250 Antisense, RP_050414_03_G06, Mouse strain C57BL/6J (56 days, male) 4.0

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The Human Protein Atlas project is funded
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