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SCCPDH
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.2 nTPM
HPA:45.2 nTPM
GTEx:51.4 nTPM
FANTOM5:159.4 Scaled Tags Per Million
Pig:51.4 nTPM
Mouse:167.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.4
1870 Female, age 42, unknown 50.5
2411 Female, age 72, unknown 48.8
1830 Male, age 51, unknown 40.1
2019 Male, age 18, unknown 39.7
1833 Male, age 53, unknown 39.5
1827 Male, age 72, unknown 36.4
2828 Female, age 72, unknown 36.4
2219 Male, age 76, both hemispheres 35.5
2666 Male, age 74, left hemisphere 34.1
2586 Male, age 75, left hemisphere 33.5
Dorsal raphe nucleus
nTPM: 42.8
2750 Male, age 76, both hemispheres 54.7
2298 Female, age 72, unknown 42.0
2047 Male, age 72, unknown 40.9
1828 Male, age 53, unknown 39.3
2016 Female, age 72, unknown 37.5
Inferior colliculus
nTPM: 35.5
1890 Male, age 53, unknown 37.2
2097 Female, age 72, unknown 36.2
1848 Female, age 42, unknown 35.5
2849 Male, age 72, unknown 33.1
Median raphe nucleus
nTPM: 45.2
2220 Male, age 76, midline 45.2
Pedunculopontine tegmental nucleus
nTPM: 41.8
2334 Male, age 80, both hemispheres 43.1
2338 Male, age 61, both hemispheres 41.2
1921 Female, age 85, both hemispheres 41.0
Periaquaductal grey, anterior
nTPM: 35.9
1947 Male, age 18, unknown 36.4
2502 Female, age 75, unknown 35.9
1795 Male, age 51, unknown 35.4
Periaquaductal grey, dorsal
nTPM: 35.8
1840 Male, age 53, unknown 36.7
1831 Male, age 72, unknown 36.1
2850 Male, age 76, both hemispheres 35.5
2464 Female, age 72, unknown 35.0
Periaquaductal grey, lateral
nTPM: 36.6
2272 Male, age 74, both hemispheres 38.3
2053 Male, age 18, unknown 37.8
2140 Male, age 76, both hemispheres 33.9
Pretectal area
nTPM: 36.5
2273 Male, age 74, both hemispheres 41.9
2224 Female, age 72, unknown 39.4
2825 Male, age 18, unknown 39.2
2667 Female, age 75, unknown 37.7
2007 Male, age 72, unknown 36.5
1815 Male, age 53, unknown 35.8
1817 Female, age 42, unknown 34.7
1944 Female, age 72, unknown 34.6
2316 Male, age 76, right hemisphere 34.4
1816 Male, age 51, unknown 34.3
2407 Male, age 75, both hemispheres 33.1
Red nucleus
nTPM: 41.5
1821 Female, age 72, unknown 49.0
2823 Male, age 76, right hemisphere 43.8
1865 Male, age 51, unknown 43.7
2769 Male, age 72, unknown 43.0
2227 Male, age 72, unknown 42.0
1954 Female, age 42, unknown 41.9
2503 Female, age 72, unknown 41.9
1904 Male, age 53, unknown 41.3
2588 Male, age 74, left hemisphere 38.5
2584 Male, age 75, left hemisphere 38.2
2725 Female, age 75, unknown 37.8
2785 Male, age 18, unknown 37.0
Substantia nigra
nTPM: 38.9
2241 Male, age 72, unknown 43.2
1941 Male, age 53, unknown 41.7
1916 Female, age 42, unknown 41.5
1851 Male, age 51, unknown 40.9
1889 Female, age 72, unknown 40.8
2590 Female, age 75, unknown 39.1
2699 Male, age 18, unknown 38.8
2409 Female, age 72, unknown 35.8
2583 Male, age 75, right hemisphere 34.7
2665 Male, age 74, both hemispheres 32.7
Superior colliculus
nTPM: 36.8
2587 Male, age 74, left hemisphere 43.8
1913 Female, age 42, unknown 43.7
2668 Female, age 75, unknown 37.7
1995 Male, age 72, unknown 36.5
1895 Male, age 76, right hemisphere 36.0
1839 Male, age 51, unknown 35.6
2261 Male, age 18, unknown 35.0
1796 Male, age 53, unknown 34.5
2087 Female, age 72, unknown 34.3
2664 Male, age 75, both hemispheres 30.5
Ventral tegmental area
nTPM: 43.3
2223 Female, age 72, unknown 52.9
2410 Female, age 72, unknown 42.8
2021 Male, age 53, unknown 41.9
1942 Male, age 51, unknown 41.2
2218 Male, age 76, both hemispheres 40.9
1915 Female, age 42, unknown 40.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.4
Samples: 139

Max nTPM: 131.5
Min nTPM: 28.7
Std nTPM: 17.2
Median nTPM: 46.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 131.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 123.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 113.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 108.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 102.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 98.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 86.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 83.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 80.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 75.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 73.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 159.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 159.4
FF:10158-103A5 76 years, female 159.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.4
Pig sample Sample description nTPM
Midbrain
nTPM: 51.2
Samples: 4

Max nTPM: 63.9
Min nTPM: 42.5
Sample A Female 63.9
Sample B Female 46.4
Sample C Male 51.9
Sample D Male 42.5
Periaqueductal gray
nTPM: 43.0
Samples: 3

Max nTPM: 50.4
Min nTPM: 36.1
Sample B Female 42.5
Sample C Male 50.4
Sample D Male 36.1
Substantia nigra
nTPM: 51.4
Samples: 4

Max nTPM: 70.8
Min nTPM: 38.0
Sample A Female 70.8
Sample B Female 38.1
Sample C Male 58.5
Sample D Male 38.0
Superior colliculi
nTPM: 49.6
Samples: 4

Max nTPM: 61.9
Min nTPM: 33.7
Sample A Female 61.9
Sample B Female 33.7
Sample C Male 59.0
Sample D Male 43.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 167.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 167.4
Samples: 4

Max nTPM: 170.9
Min nTPM: 165.4
Sample A Male 166.4
Sample B Male 165.4
Sample C Female 166.8
Sample D Female 170.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71724840 Antisense, RP_050921_01_G11, Mouse strain C57BL/6J (56 days, male) 0.1
73635772 Antisense, RP_050921_01_G11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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