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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1192.8 nTPM
HPA:1192.8 nTPM
GTEx:1151.3 nTPM
FANTOM5:1165.0 Scaled Tags Per Million
Pig:2.8 nTPM
Mouse:1700.8 nTPM
Allen mouse:15.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1192.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1119.5
2019 Male, age 18, unknown 1223.1
1870 Female, age 42, unknown 1176.6
2411 Female, age 72, unknown 1171.9
1827 Male, age 72, unknown 1150.2
1833 Male, age 53, unknown 1111.1
1830 Male, age 51, unknown 1097.0
2828 Female, age 72, unknown 1085.4
2219 Male, age 76, both hemispheres 1075.5
2666 Male, age 74, left hemisphere 1066.0
2586 Male, age 75, left hemisphere 1038.3
Dorsal raphe nucleus
nTPM: 1115.9
2750 Male, age 76, both hemispheres 1151.5
2298 Female, age 72, unknown 1147.2
1828 Male, age 53, unknown 1121.7
2047 Male, age 72, unknown 1093.6
2016 Female, age 72, unknown 1065.7
Inferior colliculus
nTPM: 1110.8
2097 Female, age 72, unknown 1175.1
1848 Female, age 42, unknown 1103.1
1890 Male, age 53, unknown 1100.6
2849 Male, age 72, unknown 1064.6
Median raphe nucleus
nTPM: 1109.2
2220 Male, age 76, midline 1109.2
Pedunculopontine tegmental nucleus
nTPM: 1145.2
2334 Male, age 80, both hemispheres 1157.6
1921 Female, age 85, both hemispheres 1150.5
2338 Male, age 61, both hemispheres 1127.7
Periaquaductal grey, anterior
nTPM: 1136.4
1947 Male, age 18, unknown 1147.9
2502 Female, age 75, unknown 1142.3
1795 Male, age 51, unknown 1118.9
Periaquaductal grey, dorsal
nTPM: 1091.4
2464 Female, age 72, unknown 1098.3
1831 Male, age 72, unknown 1097.1
1840 Male, age 53, unknown 1088.0
2850 Male, age 76, both hemispheres 1082.5
Periaquaductal grey, lateral
nTPM: 1095.1
2053 Male, age 18, unknown 1119.4
2272 Male, age 74, both hemispheres 1106.7
2140 Male, age 76, both hemispheres 1059.3
Pretectal area
nTPM: 1192.8
1944 Female, age 72, unknown 1323.6
2007 Male, age 72, unknown 1288.9
1817 Female, age 42, unknown 1282.9
1816 Male, age 51, unknown 1275.2
1815 Male, age 53, unknown 1231.5
2667 Female, age 75, unknown 1176.9
2224 Female, age 72, unknown 1138.1
2273 Male, age 74, both hemispheres 1130.7
2825 Male, age 18, unknown 1094.6
2316 Male, age 76, right hemisphere 1092.6
2407 Male, age 75, both hemispheres 1086.3
Red nucleus
nTPM: 1147.7
1821 Female, age 72, unknown 1245.8
2785 Male, age 18, unknown 1199.9
1865 Male, age 51, unknown 1169.1
1954 Female, age 42, unknown 1160.9
2823 Male, age 76, right hemisphere 1160.3
2725 Female, age 75, unknown 1156.8
2503 Female, age 72, unknown 1148.1
1904 Male, age 53, unknown 1138.1
2588 Male, age 74, left hemisphere 1102.3
2769 Male, age 72, unknown 1101.1
2227 Male, age 72, unknown 1097.9
2584 Male, age 75, left hemisphere 1092.6
Substantia nigra
nTPM: 1134.7
1889 Female, age 72, unknown 1230.5
2241 Male, age 72, unknown 1183.5
2590 Female, age 75, unknown 1154.6
1941 Male, age 53, unknown 1143.4
1851 Male, age 51, unknown 1136.7
1916 Female, age 42, unknown 1134.9
2409 Female, age 72, unknown 1127.5
2583 Male, age 75, right hemisphere 1116.4
2665 Male, age 74, both hemispheres 1090.0
2699 Male, age 18, unknown 1029.9
Superior colliculus
nTPM: 1137.4
2087 Female, age 72, unknown 1201.9
1913 Female, age 42, unknown 1185.8
2587 Male, age 74, left hemisphere 1178.9
1895 Male, age 76, right hemisphere 1164.5
2261 Male, age 18, unknown 1159.2
1995 Male, age 72, unknown 1130.4
1796 Male, age 53, unknown 1113.5
2668 Female, age 75, unknown 1099.2
1839 Male, age 51, unknown 1089.4
2664 Male, age 75, both hemispheres 1050.8
Ventral tegmental area
nTPM: 1105.1
2410 Female, age 72, unknown 1146.3
2223 Female, age 72, unknown 1106.5
2218 Male, age 76, both hemispheres 1099.2
1915 Female, age 42, unknown 1098.7
1942 Male, age 51, unknown 1091.1
2021 Male, age 53, unknown 1088.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1151.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1151.3
Samples: 139

Max nTPM: 1773.9
Min nTPM: 688.8
Std nTPM: 223.2
Median nTPM: 1110.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1773.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1768.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1744.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1719.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1669.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1630.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1600.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1598.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1536.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1533.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1529.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1165.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1165.0
FF:10158-103A5 76 years, female 1165.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.8
Pig sample Sample description nTPM
Midbrain
nTPM: 1.7
Samples: 4

Max nTPM: 2.1
Min nTPM: 0.8
Sample A Female 0.8
Sample B Female 1.9
Sample C Male 2.1
Sample D Male 1.9
Periaqueductal gray
nTPM: 2.8
Samples: 3

Max nTPM: 3.4
Min nTPM: 2.4
Sample B Female 2.4
Sample C Male 3.4
Sample D Male 2.5
Substantia nigra
nTPM: 1.6
Samples: 4

Max nTPM: 2.5
Min nTPM: 0.7
Sample A Female 0.7
Sample B Female 1.5
Sample C Male 1.8
Sample D Male 2.5
Superior colliculi
nTPM: 1.6
Samples: 4

Max nTPM: 2.2
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 2.2
Sample C Male 2.2
Sample D Male 1.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1700.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1700.8
Samples: 4

Max nTPM: 1730.7
Min nTPM: 1664.4
Sample A Male 1716.9
Sample B Male 1730.7
Sample C Female 1691.3
Sample D Female 1664.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.4
182 Antisense, RP_Baylor_102653, Mouse strain C57BL/6J (56 days, male) 15.4
183 Antisense, RP_Baylor_102653, Mouse strain C57BL/6J (56 days, male) 14.6

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.