ABOUTMENU
HELP
NEWS
ACKR3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA:16.0 nTPM
GTEx:8.4 nTPM
FANTOM5:22.3 Scaled Tags Per Million
Pig:21.4 nTPM
Mouse:8.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.1
2586 Male, age 75, left hemisphere 13.6
2828 Female, age 72, unknown 13.0
1833 Male, age 53, unknown 11.7
1827 Male, age 72, unknown 11.6
1830 Male, age 51, unknown 11.4
1870 Female, age 42, unknown 10.7
2666 Male, age 74, left hemisphere 10.1
2019 Male, age 18, unknown 9.7
2219 Male, age 76, both hemispheres 9.7
2411 Female, age 72, unknown 9.7
Dorsal raphe nucleus
nTPM: 13.0
2298 Female, age 72, unknown 14.7
2016 Female, age 72, unknown 14.3
1828 Male, age 53, unknown 12.9
2047 Male, age 72, unknown 12.9
2750 Male, age 76, both hemispheres 10.0
Inferior colliculus
nTPM: 14.5
1848 Female, age 42, unknown 16.3
2849 Male, age 72, unknown 15.9
1890 Male, age 53, unknown 13.4
2097 Female, age 72, unknown 12.4
Median raphe nucleus
nTPM: 10.8
2220 Male, age 76, midline 10.8
Pedunculopontine tegmental nucleus
nTPM: 11.6
2334 Male, age 80, both hemispheres 12.2
1921 Female, age 85, both hemispheres 12.0
2338 Male, age 61, both hemispheres 10.5
Periaquaductal grey, anterior
nTPM: 13.0
1795 Male, age 51, unknown 14.0
2502 Female, age 75, unknown 12.8
1947 Male, age 18, unknown 12.1
Periaquaductal grey, dorsal
nTPM: 13.8
1840 Male, age 53, unknown 16.5
1831 Male, age 72, unknown 13.7
2464 Female, age 72, unknown 12.5
2850 Male, age 76, both hemispheres 12.5
Periaquaductal grey, lateral
nTPM: 16.0
2272 Male, age 74, both hemispheres 19.4
2053 Male, age 18, unknown 15.0
2140 Male, age 76, both hemispheres 13.6
Pretectal area
nTPM: 13.0
2273 Male, age 74, both hemispheres 22.1
2224 Female, age 72, unknown 15.3
2667 Female, age 75, unknown 14.2
2825 Male, age 18, unknown 12.6
1817 Female, age 42, unknown 12.4
2407 Male, age 75, both hemispheres 12.1
1944 Female, age 72, unknown 11.9
1816 Male, age 51, unknown 11.3
2316 Male, age 76, right hemisphere 10.6
1815 Male, age 53, unknown 10.3
2007 Male, age 72, unknown 10.0
Red nucleus
nTPM: 11.0
1954 Female, age 42, unknown 12.5
1821 Female, age 72, unknown 12.1
2725 Female, age 75, unknown 12.0
2769 Male, age 72, unknown 11.9
2227 Male, age 72, unknown 11.5
1904 Male, age 53, unknown 11.4
2503 Female, age 72, unknown 10.5
1865 Male, age 51, unknown 10.3
2588 Male, age 74, left hemisphere 10.2
2584 Male, age 75, left hemisphere 10.0
2785 Male, age 18, unknown 9.9
2823 Male, age 76, right hemisphere 9.9
Substantia nigra
nTPM: 11.5
2699 Male, age 18, unknown 15.2
1916 Female, age 42, unknown 12.9
1851 Male, age 51, unknown 12.0
1889 Female, age 72, unknown 11.6
2583 Male, age 75, right hemisphere 11.4
2590 Female, age 75, unknown 11.3
2665 Male, age 74, both hemispheres 11.1
1941 Male, age 53, unknown 10.0
2409 Female, age 72, unknown 9.9
2241 Male, age 72, unknown 9.8
Superior colliculus
nTPM: 12.3
1995 Male, age 72, unknown 13.5
2664 Male, age 75, both hemispheres 13.5
2587 Male, age 74, left hemisphere 13.4
1796 Male, age 53, unknown 13.1
1839 Male, age 51, unknown 12.9
2261 Male, age 18, unknown 12.9
2087 Female, age 72, unknown 12.4
1913 Female, age 42, unknown 11.3
2668 Female, age 75, unknown 10.0
1895 Male, age 76, right hemisphere 9.6
Ventral tegmental area
nTPM: 11.6
1915 Female, age 42, unknown 12.9
2021 Male, age 53, unknown 12.1
2410 Female, age 72, unknown 11.7
2223 Female, age 72, unknown 11.0
1942 Male, age 51, unknown 10.9
2218 Male, age 76, both hemispheres 10.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.4
Samples: 139

Max nTPM: 48.7
Min nTPM: 1.2
Std nTPM: 6.1
Median nTPM: 6.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 48.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 32.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 28.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 25.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 25.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 23.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 19.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 18.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 18.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 14.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 14.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.3
FF:10158-103A5 76 years, female 22.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.4
Pig sample Sample description nTPM
Midbrain
nTPM: 11.7
Samples: 4

Max nTPM: 21.5
Min nTPM: 7.2
Sample A Female 21.5
Sample B Female 9.5
Sample C Male 8.6
Sample D Male 7.2
Periaqueductal gray
nTPM: 6.3
Samples: 3

Max nTPM: 7.0
Min nTPM: 5.5
Sample B Female 7.0
Sample C Male 5.5
Sample D Male 6.3
Substantia nigra
nTPM: 13.0
Samples: 4

Max nTPM: 17.2
Min nTPM: 8.4
Sample A Female 11.8
Sample B Female 17.2
Sample C Male 8.4
Sample D Male 14.7
Superior colliculi
nTPM: 21.5
Samples: 4

Max nTPM: 43.3
Min nTPM: 9.3
Sample A Female 21.9
Sample B Female 43.3
Sample C Male 9.3
Sample D Male 11.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 8.7
Min nTPM: 7.9
Sample A Male 8.2
Sample B Male 7.9
Sample C Female 8.1
Sample D Female 8.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
79543540 Antisense, RP_071018_01_E07, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.