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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.7 nTPM
HPA:35.7 nTPM
GTEx:25.5 nTPM
FANTOM5:41.6 Scaled Tags Per Million
Pig:46.4 nTPM
Mouse:61.0 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.5
2019 Male, age 18, unknown 35.9
1870 Female, age 42, unknown 34.5
2411 Female, age 72, unknown 34.3
2666 Male, age 74, left hemisphere 34.0
1827 Male, age 72, unknown 33.8
1830 Male, age 51, unknown 33.0
1833 Male, age 53, unknown 32.9
2219 Male, age 76, both hemispheres 32.5
2828 Female, age 72, unknown 32.4
2586 Male, age 75, left hemisphere 31.9
Dorsal raphe nucleus
nTPM: 34.3
2298 Female, age 72, unknown 35.7
1828 Male, age 53, unknown 35.2
2047 Male, age 72, unknown 34.8
2016 Female, age 72, unknown 33.2
2750 Male, age 76, both hemispheres 32.9
Inferior colliculus
nTPM: 33.3
1890 Male, age 53, unknown 34.0
2097 Female, age 72, unknown 33.5
1848 Female, age 42, unknown 33.0
2849 Male, age 72, unknown 32.6
Median raphe nucleus
nTPM: 35.0
2220 Male, age 76, midline 35.0
Pedunculopontine tegmental nucleus
nTPM: 35.7
2334 Male, age 80, both hemispheres 36.9
2338 Male, age 61, both hemispheres 35.9
1921 Female, age 85, both hemispheres 34.3
Periaquaductal grey, anterior
nTPM: 34.5
1947 Male, age 18, unknown 35.9
1795 Male, age 51, unknown 33.8
2502 Female, age 75, unknown 33.7
Periaquaductal grey, dorsal
nTPM: 35.2
2850 Male, age 76, both hemispheres 42.8
1831 Male, age 72, unknown 33.1
1840 Male, age 53, unknown 32.8
2464 Female, age 72, unknown 32.0
Periaquaductal grey, lateral
nTPM: 34.2
2140 Male, age 76, both hemispheres 36.4
2272 Male, age 74, both hemispheres 33.8
2053 Male, age 18, unknown 32.5
Pretectal area
nTPM: 35.0
1815 Male, age 53, unknown 36.8
1817 Female, age 42, unknown 36.8
2007 Male, age 72, unknown 36.6
1816 Male, age 51, unknown 36.0
1944 Female, age 72, unknown 34.9
2224 Female, age 72, unknown 34.9
2273 Male, age 74, both hemispheres 34.7
2407 Male, age 75, both hemispheres 34.4
2667 Female, age 75, unknown 33.9
2316 Male, age 76, right hemisphere 33.6
2825 Male, age 18, unknown 32.2
Red nucleus
nTPM: 34.0
2725 Female, age 75, unknown 38.4
1821 Female, age 72, unknown 35.6
2503 Female, age 72, unknown 35.1
2785 Male, age 18, unknown 35.0
1954 Female, age 42, unknown 33.9
1865 Male, age 51, unknown 33.8
1904 Male, age 53, unknown 33.6
2227 Male, age 72, unknown 33.0
2769 Male, age 72, unknown 32.9
2823 Male, age 76, right hemisphere 32.9
2584 Male, age 75, left hemisphere 32.2
2588 Male, age 74, left hemisphere 31.4
Substantia nigra
nTPM: 34.6
1916 Female, age 42, unknown 37.7
2241 Male, age 72, unknown 36.7
1889 Female, age 72, unknown 36.5
1851 Male, age 51, unknown 36.4
2665 Male, age 74, both hemispheres 35.0
2699 Male, age 18, unknown 33.6
2409 Female, age 72, unknown 33.2
1941 Male, age 53, unknown 33.1
2590 Female, age 75, unknown 32.8
2583 Male, age 75, right hemisphere 31.3
Superior colliculus
nTPM: 33.0
1796 Male, age 53, unknown 34.5
2587 Male, age 74, left hemisphere 34.5
2261 Male, age 18, unknown 33.4
1895 Male, age 76, right hemisphere 33.1
1913 Female, age 42, unknown 32.6
1995 Male, age 72, unknown 32.6
2668 Female, age 75, unknown 32.6
2087 Female, age 72, unknown 32.5
1839 Male, age 51, unknown 32.2
2664 Male, age 75, both hemispheres 31.5
Ventral tegmental area
nTPM: 34.0
1915 Female, age 42, unknown 35.8
2410 Female, age 72, unknown 34.7
2218 Male, age 76, both hemispheres 34.3
1942 Male, age 51, unknown 33.2
2021 Male, age 53, unknown 33.0
2223 Female, age 72, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.5
Samples: 139

Max nTPM: 123.7
Min nTPM: 8.3
Std nTPM: 17.9
Median nTPM: 19.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 123.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 95.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 87.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 83.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 80.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 79.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 74.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 72.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 63.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 56.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 51.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.6
FF:10158-103A5 76 years, female 41.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.4
Pig sample Sample description nTPM
Midbrain
nTPM: 44.1
Samples: 4

Max nTPM: 47.8
Min nTPM: 40.7
Sample A Female 47.8
Sample B Female 41.7
Sample C Male 40.7
Sample D Male 46.2
Periaqueductal gray
nTPM: 40.3
Samples: 3

Max nTPM: 43.2
Min nTPM: 37.1
Sample B Female 37.1
Sample C Male 40.5
Sample D Male 43.2
Substantia nigra
nTPM: 39.3
Samples: 4

Max nTPM: 50.0
Min nTPM: 31.2
Sample A Female 50.0
Sample B Female 33.4
Sample C Male 42.4
Sample D Male 31.2
Superior colliculi
nTPM: 46.5
Samples: 4

Max nTPM: 54.3
Min nTPM: 43.2
Sample A Female 54.3
Sample B Female 43.2
Sample C Male 45.0
Sample D Male 43.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.0
Samples: 4

Max nTPM: 67.2
Min nTPM: 53.4
Sample A Male 53.4
Sample B Male 56.5
Sample C Female 67.2
Sample D Female 66.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
69114211 Antisense, RP_050317_01_C08, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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