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GIGYF1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:19.5 nTPM
HPA:19.5 nTPM
GTEx:15.0 nTPM
FANTOM5:60.6 Scaled Tags Per Million
Pig:8.9 nTPM
Mouse:18.3 nTPM
Allen mouse:3.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA020999Antibody HPA023995
Glial cells LowHigh
Neuronal cells LowMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 19.5
Sample id Sample description nTPM
Hippocampus
nTPM: 17.5
2529 Female, age 94, left hemisphere 19.6
2148 Female, age 91, left hemisphere 19.3
2621 Female, age 67, right hemisphere 18.1
1911 Female, age 85, right hemisphere 17.4
1855 Male, age 76, left hemisphere 15.9
1898 Male, age 80, left hemisphere 14.5
Dentate gyrus
nTPM: 17.6
2531 Female, age 67, both hemispheres 20.3
2530 Female, age 94, left hemisphere 18.9
2528 Male, age 74, both hemispheres 17.7
2246 Female, age 85, both hemispheres 16.7
1927 Female, age 91, both hemispheres 16.4
2010 Male, age 76, both hemispheres 15.7
Entorhinal gyrus
nTPM: 19.5
2613 Female, age 94, left hemisphere 21.3
2686 Male, age 75, right hemisphere 21.3
2764 Male, age 80, right hemisphere 21.2
1787 Male, age 76, left hemisphere 19.7
2117 Female, age 91, right hemisphere 18.3
1938 Female, age 85, left hemisphere 15.1
Hippocampus, CA1
nTPM: 16.7
2082 Female, age 91, right hemisphere 20.4
2527 Male, age 74, both hemispheres 16.7
1873 Female, age 85, both hemispheres 16.1
2045 Male, age 76, both hemispheres 15.4
2749 Male, age 80, left hemisphere 14.9
Hippocampus, CA2
nTPM: 17.3
2113 Female, age 91, right hemisphere 19.5
2437 Female, age 94, left hemisphere 19.3
1892 Male, age 76, both hemispheres 16.4
1940 Female, age 85, left hemisphere 16.4
1963 Male, age 80, left hemisphere 16.3
2249 Male, age 74, both hemispheres 15.9
Hippocampus, CA3
nTPM: 18.2
2620 Female, age 94, left hemisphere 22.3
2861 Female, age 67, both hemispheres 21.4
1891 Female, age 85, both hemispheres 17.1
2436 Male, age 74, both hemispheres 16.5
1867 Male, age 76, both hemispheres 16.3
2137 Male, age 80, left hemisphere 15.3
Parahippocampal cortex
nTPM: 18.2
2622 Female, age 67, right hemisphere 23.4
2532 Female, age 72, left hemisphere 18.9
2692 Male, age 74, both hemispheres 18.9
2693 Female, age 94, both hemispheres 18.4
1990 Female, age 91, right hemisphere 18.3
2245 Female, age 91, both hemispheres 18.1
2018 Male, age 76, both hemispheres 17.5
2250 Female, age 67, right hemisphere 16.6
1850 Male, age 80, both hemispheres 16.4
1933 Female, age 85, both hemispheres 16.0
Perirhinal gyrus
nTPM: 16.8
2848 Male, age 76, right hemisphere 18.9
2521 Female, age 94, right hemisphere 17.5
1794 Male, age 80, right hemisphere 17.4
1841 Female, age 85, right hemisphere 15.2
1847 Female, age 91, left hemisphere 15.1
Subiculum
nTPM: 18.0
2619 Male, age 74, both hemispheres 19.2
2729 Female, age 91, right hemisphere 18.8
2438 Female, age 94, left hemisphere 18.1
2042 Male, age 76, both hemispheres 18.0
1977 Female, age 85, both hemispheres 17.0
1901 Male, age 80, both hemispheres 16.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.0
Samples: 197

Max nTPM: 28.4
Min nTPM: 4.3
Std nTPM: 3.8
Median nTPM: 14.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 28.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 26.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 26.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 23.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 23.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 23.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 23.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 23.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 22.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 22.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 21.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 60.6
FF:10153-102I9 76 years, female 79.3
FF:10169-103B7 60 years, female 41.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 8.2
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.0
Sample A Female 8.8
Sample B Female 8.1
Sample C Male 8.9
Sample D Male 7.0
Entorhinal cortex
nTPM: 7.5
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.9
Sample A Female 8.1
Sample B Female 6.9
Sample C Male 7.6
Sample D Male 7.2
Subiculum
nTPM: 8.6
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.8
Sample A Female 9.8
Sample B Female 7.9
Sample C Male 8.7
Sample D Male 7.8
Ventral hippocampus
nTPM: 8.9
Samples: 4

Max nTPM: 11.1
Min nTPM: 7.5
Sample A Female 8.1
Sample B Female 7.5
Sample C Male 11.1
Sample D Male 8.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.4
Samples: 4

Max nTPM: 20.3
Min nTPM: 16.9
Sample A Male 20.3
Sample B Male 18.7
Sample C Female 17.5
Sample D Female 16.9
Hippocampal formation
nTPM: 18.2
Samples: 4

Max nTPM: 20.1
Min nTPM: 14.6
Sample A Male 18.5
Sample B Male 20.1
Sample C Female 14.6
Sample D Female 19.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.3
69782993 Antisense, RP_050505_04_B07, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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