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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.2 nTPM
HPA:18.2 nTPM
GTEx:10.5 nTPM
FANTOM5:30.5 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
1830 Male, age 51, unknown 18.8
1870 Female, age 42, unknown 18.2
2219 Male, age 76, both hemispheres 18.2
2411 Female, age 72, unknown 18.1
1833 Male, age 53, unknown 17.7
1827 Male, age 72, unknown 16.5
2666 Male, age 74, left hemisphere 15.8
2828 Female, age 72, unknown 15.5
2019 Male, age 18, unknown 14.3
2586 Male, age 75, left hemisphere 14.2
Dorsal raphe nucleus
nTPM: 16.6
2047 Male, age 72, unknown 18.1
2016 Female, age 72, unknown 17.3
1828 Male, age 53, unknown 16.4
2750 Male, age 76, both hemispheres 16.0
2298 Female, age 72, unknown 15.1
Inferior colliculus
nTPM: 18.2
2849 Male, age 72, unknown 21.1
1848 Female, age 42, unknown 19.1
1890 Male, age 53, unknown 16.3
2097 Female, age 72, unknown 16.1
Median raphe nucleus
nTPM: 16.8
2220 Male, age 76, midline 16.8
Pedunculopontine tegmental nucleus
nTPM: 18.1
2338 Male, age 61, both hemispheres 18.8
1921 Female, age 85, both hemispheres 18.0
2334 Male, age 80, both hemispheres 17.4
Periaquaductal grey, anterior
nTPM: 14.8
1947 Male, age 18, unknown 15.9
1795 Male, age 51, unknown 14.9
2502 Female, age 75, unknown 13.5
Periaquaductal grey, dorsal
nTPM: 17.9
1840 Male, age 53, unknown 20.9
2464 Female, age 72, unknown 18.2
2850 Male, age 76, both hemispheres 17.5
1831 Male, age 72, unknown 15.0
Periaquaductal grey, lateral
nTPM: 17.7
2140 Male, age 76, both hemispheres 18.8
2053 Male, age 18, unknown 17.3
2272 Male, age 74, both hemispheres 17.0
Pretectal area
nTPM: 16.1
2825 Male, age 18, unknown 20.5
2407 Male, age 75, both hemispheres 19.1
2316 Male, age 76, right hemisphere 18.4
2667 Female, age 75, unknown 18.2
2224 Female, age 72, unknown 17.7
2273 Male, age 74, both hemispheres 17.1
1815 Male, age 53, unknown 14.4
1944 Female, age 72, unknown 14.2
1817 Female, age 42, unknown 12.6
2007 Male, age 72, unknown 12.6
1816 Male, age 51, unknown 12.5
Red nucleus
nTPM: 16.8
2227 Male, age 72, unknown 18.5
2725 Female, age 75, unknown 17.7
2503 Female, age 72, unknown 17.5
1865 Male, age 51, unknown 17.2
2769 Male, age 72, unknown 17.0
1954 Female, age 42, unknown 16.9
1821 Female, age 72, unknown 16.5
2823 Male, age 76, right hemisphere 16.5
2588 Male, age 74, left hemisphere 16.4
2785 Male, age 18, unknown 16.3
1904 Male, age 53, unknown 16.2
2584 Male, age 75, left hemisphere 15.4
Substantia nigra
nTPM: 16.5
2241 Male, age 72, unknown 18.8
2590 Female, age 75, unknown 17.8
2583 Male, age 75, right hemisphere 17.6
2665 Male, age 74, both hemispheres 17.2
2409 Female, age 72, unknown 16.9
1941 Male, age 53, unknown 16.4
2699 Male, age 18, unknown 16.3
1916 Female, age 42, unknown 15.1
1851 Male, age 51, unknown 14.9
1889 Female, age 72, unknown 14.1
Superior colliculus
nTPM: 16.1
1895 Male, age 76, right hemisphere 20.1
1839 Male, age 51, unknown 19.0
2587 Male, age 74, left hemisphere 16.6
2664 Male, age 75, both hemispheres 16.6
1913 Female, age 42, unknown 15.9
2087 Female, age 72, unknown 15.4
1995 Male, age 72, unknown 14.9
1796 Male, age 53, unknown 14.7
2261 Male, age 18, unknown 14.0
2668 Female, age 75, unknown 13.3
Ventral tegmental area
nTPM: 16.2
2021 Male, age 53, unknown 17.9
2223 Female, age 72, unknown 17.4
1942 Male, age 51, unknown 16.2
1915 Female, age 42, unknown 15.9
2410 Female, age 72, unknown 14.9
2218 Male, age 76, both hemispheres 14.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.5
Samples: 139

Max nTPM: 18.9
Min nTPM: 4.9
Std nTPM: 2.3
Median nTPM: 10.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 18.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 17.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 16.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 15.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 14.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 14.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 14.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 14.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 14.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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