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MRPS28
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:67.7 nTPM
HPA:67.7 nTPM
GTEx:67.1 nTPM
FANTOM5:42.4 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:21.4 nTPM
Allen mouse:0.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA027202
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 67.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 64.4
1854 Male, age 80, left hemisphere 66.7
2481 Female, age 94, left hemisphere 66.0
1857 Female, age 85, left hemisphere 65.4
2288 Male, age 75, left hemisphere 64.9
2290 Female, age 72, unknown 64.2
2289 Male, age 61, right hemisphere 64.1
2846 Female, age 79, unknown 64.1
1781 Male, age 74, unknown 59.5
Claustrum
nTPM: 61.5
2392 Female, age 94, both hemispheres 65.9
1956 Male, age 74, unknown 64.2
2196 Female, age 79, unknown 62.7
2292 Female, age 85, both hemispheres 62.0
2198 Male, age 80, both hemispheres 61.0
2568 Male, age 61, both hemispheres 60.2
2491 Male, age 75, both hemispheres 59.7
2284 Female, age 91, both hemispheres 59.1
2645 Female, age 72, unknown 58.9
Globus pallidus, externus
nTPM: 67.0
1996 Male, age 80, right hemisphere 70.6
2395 Male, age 75, both hemispheres 69.2
2772 Female, age 79, unknown 68.4
2646 Male, age 61, right hemisphere 66.4
2567 Female, age 72, unknown 60.5
Globus pallidus, internus
nTPM: 67.7
2037 Male, age 80, right hemisphere 72.0
2778 Female, age 91, both hemispheres 70.9
2483 Female, age 94, right hemisphere 68.4
1818 Male, age 74, unknown 67.0
2111 Female, age 85, right hemisphere 66.7
2287 Male, age 75, right hemisphere 65.8
2566 Female, age 72, unknown 63.0
Nucleus accumbens
nTPM: 65.4
2391 Female, age 94, left hemisphere 67.6
1856 Female, age 91, right hemisphere 67.5
2698 Female, age 72, unknown 66.0
2824 Male, age 61, right hemisphere 66.0
2286 Male, age 75, left hemisphere 65.9
2732 Male, age 80, right hemisphere 65.0
1783 Male, age 74, unknown 63.3
1806 Female, age 85, left hemisphere 61.8
Nucleus basalis of Meynert
nTPM: 63.4
2393 Male, age 80, right hemisphere 68.8
2484 Female, age 94, left hemisphere 62.7
2569 Male, age 61, both hemispheres 61.9
2821 Male, age 75, both hemispheres 60.1
Nucleus of the diagonal band
nTPM: 62.8
1812 Female, age 91, both hemispheres 65.4
2775 Male, age 80, right hemisphere 63.6
2029 Male, age 61, right hemisphere 62.1
2195 Female, age 85, both hemispheres 61.7
1979 Male, age 74, unknown 61.1
Olfactory tubercle
nTPM: 64.5
1846 Male, age 80, right hemisphere 66.2
2856 Male, age 75, right hemisphere 64.7
1998 Female, age 91, both hemispheres 64.3
2487 Female, age 94, left hemisphere 62.8
Putamen
nTPM: 64.7
1838 Male, age 80, right hemisphere 68.1
1937 Female, age 91, right hemisphere 67.5
2482 Female, age 94, left hemisphere 66.9
1829 Male, age 74, unknown 64.2
2466 Female, age 79, unknown 62.4
2647 Male, age 75, left hemisphere 61.8
2489 Female, age 72, unknown 61.6
Septal nuclei
nTPM: 62.9
2199 Male, age 80, right hemisphere 66.5
2009 Female, age 91, both hemispheres 65.1
2629 Female, age 94, right hemisphere 62.8
2031 Female, age 72, unknown 62.1
2059 Female, age 85, both hemispheres 61.4
1960 Male, age 74, unknown 61.3
2394 Male, age 61, left hemisphere 61.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 67.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 63.8
Samples: 246

Max nTPM: 124.1
Min nTPM: 39.8
Std nTPM: 14.7
Median nTPM: 61.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 124.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 115.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 114.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 109.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 106.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 101.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 100.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 96.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 96.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 95.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 95.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 65.2
Samples: 246

Max nTPM: 162.6
Min nTPM: 34.1
Std nTPM: 18.7
Median nTPM: 62.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 162.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 156.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 152.6
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 130.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 121.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 120.5
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 118.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 108.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 105.1
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 100.3
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 98.1
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Brain - Putamen (basal ganglia)
Average nTPM: 67.1
Samples: 205

Max nTPM: 137.7
Min nTPM: 41.5
Std nTPM: 15.5
Median nTPM: 64.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 137.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 131.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 120.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 111.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 107.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 105.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 102.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 101.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 97.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 97.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 94.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 42.4
FF:10164-103B2 76 years, female 42.4
Globus pallidus
Scaled Tags Per Million: 33.7
FF:10175-103C4 60 years, female 37.1
FF:10161-103A8 76 years, female 30.3
Nucleus accumbens
Scaled Tags Per Million: 32.5
FF:10037-101F1 23-56 years, mixed 32.5
Putamen
Scaled Tags Per Million: 41.7
FF:10176-103C5 60 years, female 41.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.5
Pig sample Sample description nTPM
Caudate
nTPM: 11.1
Samples: 4

Max nTPM: 11.7
Min nTPM: 10.4
Sample A Female 11.7
Sample B Female 10.6
Sample C Male 11.5
Sample D Male 10.4
Putamen
nTPM: 13.5
Samples: 4

Max nTPM: 18.3
Min nTPM: 11.2
Sample A Female 12.5
Sample B Female 11.2
Sample C Male 18.3
Sample D Male 11.9
Septum
nTPM: 10.7
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.3
Sample A Female 11.5
Sample B Female 9.3
Sample C Male 11.6
Sample D Male 10.5
Ventral pallidum
nTPM: 10.9
Samples: 4

Max nTPM: 13.8
Min nTPM: 8.3
Sample A Female 10.4
Sample B Female 13.8
Sample C Male 11.1
Sample D Male 8.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 21.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.0
Samples: 4

Max nTPM: 25.6
Min nTPM: 13.9
Sample A Male 19.6
Sample B Male 25.6
Sample C Female 13.9
Sample D Female 16.7
Septum
nTPM: 20.7
Samples: 4

Max nTPM: 23.4
Min nTPM: 17.8
Sample A Male 19.5
Sample B Male 23.4
Sample C Female 22.0
Sample D Female 17.8
Ventral forebrain
nTPM: 21.3
Samples: 4

Max nTPM: 27.5
Min nTPM: 15.4
Sample A Male 23.2
Sample B Male 15.4
Sample C Female 27.5
Sample D Female 19.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
68744612 Antisense, RP_050208_01_C04, Mouse strain C57BL/6J (56 days, male) 0.6
75259441 Antisense, RP_051214_02_E05, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.4
68744612 Antisense, RP_050208_01_C04, Mouse strain C57BL/6J (56 days, male) 0.6
75259441 Antisense, RP_051214_02_E05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.