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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA:7.7 nTPM
GTEx:14.8 nTPM
FANTOM5:80.7 Scaled Tags Per Million
Pig:18.7 nTPM
Mouse:7.1 nTPM
Allen mouse:1.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 6.6
2288 Male, age 75, left hemisphere 7.9
2481 Female, age 94, left hemisphere 6.8
2290 Female, age 72, unknown 6.7
1857 Female, age 85, left hemisphere 6.5
2846 Female, age 79, unknown 6.4
1854 Male, age 80, left hemisphere 6.2
1781 Male, age 74, unknown 6.1
2289 Male, age 61, right hemisphere 5.7
Claustrum
nTPM: 5.7
1956 Male, age 74, unknown 6.5
2392 Female, age 94, both hemispheres 6.3
2196 Female, age 79, unknown 5.8
2292 Female, age 85, both hemispheres 5.8
2198 Male, age 80, both hemispheres 5.7
2284 Female, age 91, both hemispheres 5.7
2491 Male, age 75, both hemispheres 5.6
2568 Male, age 61, both hemispheres 4.8
2645 Female, age 72, unknown 4.6
Globus pallidus, externus
nTPM: 5.3
1996 Male, age 80, right hemisphere 6.8
2772 Female, age 79, unknown 6.4
2395 Male, age 75, both hemispheres 5.7
2646 Male, age 61, right hemisphere 3.9
2567 Female, age 72, unknown 3.8
Globus pallidus, internus
nTPM: 6.3
2287 Male, age 75, right hemisphere 8.0
2778 Female, age 91, both hemispheres 6.8
1818 Male, age 74, unknown 6.4
2037 Male, age 80, right hemisphere 6.4
2483 Female, age 94, right hemisphere 5.9
2111 Female, age 85, right hemisphere 5.8
2566 Female, age 72, unknown 5.1
Nucleus accumbens
nTPM: 6.8
2286 Male, age 75, left hemisphere 8.4
2391 Female, age 94, left hemisphere 7.5
2698 Female, age 72, unknown 7.1
1783 Male, age 74, unknown 6.9
1856 Female, age 91, right hemisphere 6.8
1806 Female, age 85, left hemisphere 6.6
2824 Male, age 61, right hemisphere 6.4
2732 Male, age 80, right hemisphere 5.0
Nucleus basalis of Meynert
nTPM: 5.6
2393 Male, age 80, right hemisphere 6.1
2821 Male, age 75, both hemispheres 5.9
2484 Female, age 94, left hemisphere 5.8
2569 Male, age 61, both hemispheres 4.6
Nucleus of the diagonal band
nTPM: 7.7
2195 Female, age 85, both hemispheres 8.8
1812 Female, age 91, both hemispheres 8.2
2775 Male, age 80, right hemisphere 7.7
2029 Male, age 61, right hemisphere 7.2
1979 Male, age 74, unknown 6.4
Olfactory tubercle
nTPM: 6.9
1846 Male, age 80, right hemisphere 7.3
2856 Male, age 75, right hemisphere 7.3
1998 Female, age 91, both hemispheres 6.5
2487 Female, age 94, left hemisphere 6.4
Putamen
nTPM: 5.8
2482 Female, age 94, left hemisphere 7.0
1829 Male, age 74, unknown 6.4
1937 Female, age 91, right hemisphere 6.3
1838 Male, age 80, right hemisphere 6.0
2466 Female, age 79, unknown 5.4
2647 Male, age 75, left hemisphere 5.4
2489 Female, age 72, unknown 4.3
Septal nuclei
nTPM: 7.0
2031 Female, age 72, unknown 9.0
1960 Male, age 74, unknown 8.3
2629 Female, age 94, right hemisphere 8.1
2009 Female, age 91, both hemispheres 6.8
2199 Male, age 80, right hemisphere 6.1
2059 Female, age 85, both hemispheres 5.9
2394 Male, age 61, left hemisphere 5.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.8
Samples: 246

Max nTPM: 29.9
Min nTPM: 8.1
Std nTPM: 2.4
Median nTPM: 14.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 29.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 23.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 22.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 21.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 21.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 20.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 20.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 19.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 19.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 19.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 18.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.7
Samples: 246

Max nTPM: 23.3
Min nTPM: 8.5
Std nTPM: 2.7
Median nTPM: 14.6
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 23.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 23.2
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 22.1
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 21.8
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 21.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 21.2
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 20.9
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 20.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 20.5
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 20.4
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 19.8
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Brain - Putamen (basal ganglia)
Average nTPM: 14.4
Samples: 205

Max nTPM: 23.3
Min nTPM: 10.3
Std nTPM: 2.1
Median nTPM: 14.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 23.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 20.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 20.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 19.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 19.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 19.7
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 18.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 18.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 18.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 18.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 18.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 72.3
FF:10164-103B2 76 years, female 72.3
Globus pallidus
Scaled Tags Per Million: 80.7
FF:10175-103C4 60 years, female 86.8
FF:10161-103A8 76 years, female 74.6
Nucleus accumbens
Scaled Tags Per Million: 54.7
FF:10037-101F1 23-56 years, mixed 54.7
Putamen
Scaled Tags Per Million: 77.6
FF:10176-103C5 60 years, female 77.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.7
Pig sample Sample description nTPM
Caudate
nTPM: 14.5
Samples: 4

Max nTPM: 17.0
Min nTPM: 12.4
Sample A Female 17.0
Sample B Female 13.1
Sample C Male 15.3
Sample D Male 12.4
Putamen
nTPM: 17.9
Samples: 4

Max nTPM: 22.6
Min nTPM: 13.9
Sample A Female 22.6
Sample B Female 14.3
Sample C Male 20.9
Sample D Male 13.9
Septum
nTPM: 18.7
Samples: 4

Max nTPM: 23.1
Min nTPM: 15.6
Sample A Female 20.0
Sample B Female 15.6
Sample C Male 23.1
Sample D Male 16.0
Ventral pallidum
nTPM: 16.9
Samples: 4

Max nTPM: 22.8
Min nTPM: 14.6
Sample A Female 14.6
Sample B Female 15.3
Sample C Male 22.8
Sample D Male 15.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.3
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.7
Sample A Male 5.8
Sample B Male 5.7
Sample C Female 5.1
Sample D Female 4.7
Septum
nTPM: 7.0
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.6
Sample A Male 7.4
Sample B Male 6.6
Sample C Female 7.2
Sample D Female 6.7
Ventral forebrain
nTPM: 7.1
Samples: 4

Max nTPM: 7.9
Min nTPM: 5.8
Sample A Male 7.0
Sample B Male 7.5
Sample C Female 7.9
Sample D Female 5.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
68545923 Antisense, RP_050120_01_G02, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 1.1
68545923 Antisense, RP_050120_01_G02, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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