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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.7 nTPM
HPA:67.7 nTPM
GTEx:59.0 nTPM
FANTOM5:138.9 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 67.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 65.2
2846 Female, age 79, unknown 68.4
2288 Male, age 75, left hemisphere 67.4
2481 Female, age 94, left hemisphere 67.1
1854 Male, age 80, left hemisphere 65.2
1857 Female, age 85, left hemisphere 65.2
2290 Female, age 72, unknown 64.9
1781 Male, age 74, unknown 63.0
2289 Male, age 61, right hemisphere 60.4
Claustrum
nTPM: 63.0
2392 Female, age 94, both hemispheres 65.9
1956 Male, age 74, unknown 65.6
2198 Male, age 80, both hemispheres 64.8
2196 Female, age 79, unknown 63.8
2491 Male, age 75, both hemispheres 62.5
2284 Female, age 91, both hemispheres 61.7
2568 Male, age 61, both hemispheres 61.2
2645 Female, age 72, unknown 61.2
2292 Female, age 85, both hemispheres 60.6
Globus pallidus, externus
nTPM: 63.1
2772 Female, age 79, unknown 69.7
1996 Male, age 80, right hemisphere 64.9
2395 Male, age 75, both hemispheres 64.7
2567 Female, age 72, unknown 58.7
2646 Male, age 61, right hemisphere 57.4
Globus pallidus, internus
nTPM: 64.3
2287 Male, age 75, right hemisphere 69.5
1818 Male, age 74, unknown 66.8
2778 Female, age 91, both hemispheres 66.7
2483 Female, age 94, right hemisphere 64.1
2037 Male, age 80, right hemisphere 63.7
2111 Female, age 85, right hemisphere 59.9
2566 Female, age 72, unknown 59.4
Nucleus accumbens
nTPM: 65.6
1856 Female, age 91, right hemisphere 69.2
2391 Female, age 94, left hemisphere 68.9
2286 Male, age 75, left hemisphere 68.4
2698 Female, age 72, unknown 66.6
2824 Male, age 61, right hemisphere 64.0
1806 Female, age 85, left hemisphere 63.8
1783 Male, age 74, unknown 62.9
2732 Male, age 80, right hemisphere 60.6
Nucleus basalis of Meynert
nTPM: 63.5
2821 Male, age 75, both hemispheres 67.8
2393 Male, age 80, right hemisphere 64.3
2484 Female, age 94, left hemisphere 63.1
2569 Male, age 61, both hemispheres 58.7
Nucleus of the diagonal band
nTPM: 67.7
1812 Female, age 91, both hemispheres 73.0
2775 Male, age 80, right hemisphere 69.2
2195 Female, age 85, both hemispheres 67.7
2029 Male, age 61, right hemisphere 65.9
1979 Male, age 74, unknown 62.8
Olfactory tubercle
nTPM: 65.8
1846 Male, age 80, right hemisphere 69.7
1998 Female, age 91, both hemispheres 67.3
2856 Male, age 75, right hemisphere 65.1
2487 Female, age 94, left hemisphere 61.0
Putamen
nTPM: 64.0
1937 Female, age 91, right hemisphere 67.3
2482 Female, age 94, left hemisphere 66.4
1838 Male, age 80, right hemisphere 65.1
2466 Female, age 79, unknown 64.8
1829 Male, age 74, unknown 64.3
2647 Male, age 75, left hemisphere 61.9
2489 Female, age 72, unknown 58.5
Septal nuclei
nTPM: 64.7
2031 Female, age 72, unknown 70.6
2009 Female, age 91, both hemispheres 67.2
1960 Male, age 74, unknown 66.4
2629 Female, age 94, right hemisphere 65.9
2199 Male, age 80, right hemisphere 62.6
2394 Male, age 61, left hemisphere 61.1
2059 Female, age 85, both hemispheres 59.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 59.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 55.0
Samples: 246

Max nTPM: 142.3
Min nTPM: 24.3
Std nTPM: 14.3
Median nTPM: 51.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 142.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 129.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 124.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 117.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 108.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 106.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 93.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 88.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 86.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 81.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 80.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 59.0
Samples: 246

Max nTPM: 126.1
Min nTPM: 28.4
Std nTPM: 12.3
Median nTPM: 56.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 126.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 125.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 108.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 99.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 87.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 87.5
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 85.9
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 85.5
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 84.4
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 83.2
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 82.6
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Brain - Putamen (basal ganglia)
Average nTPM: 56.3
Samples: 205

Max nTPM: 117.1
Min nTPM: 23.1
Std nTPM: 10.8
Median nTPM: 54.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 117.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 94.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 93.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 87.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 81.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 80.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 77.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 77.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 76.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 74.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 74.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 81.5
FF:10164-103B2 76 years, female 81.5
Globus pallidus
Scaled Tags Per Million: 96.5
FF:10175-103C4 60 years, female 116.8
FF:10161-103A8 76 years, female 76.2
Nucleus accumbens
Scaled Tags Per Million: 138.9
FF:10037-101F1 23-56 years, mixed 138.9
Putamen
Scaled Tags Per Million: 113.2
FF:10176-103C5 60 years, female 113.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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